eF-site ID 5lmm-LMST PDB Code 5lmm Chain L, M, S, T click to enlarge Title Structure of E coli Hydrogenase Hyd-1 mutant E28Q Classification OXIDOREDUCTASE Compound Hydrogenase-1 small chain Source ORGANISM_SCIENTIFIC: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC); Sequence L:  STQYETQGYTINNAGRRLVVDPITRIQGHMRCEVNINDQN VITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVXTG VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPG YFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLM GFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA IGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLM PGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAP RWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE QPLEILRTLHSFDPCLACSTH M:  STQYETQGYTINNAGRRLVVDPITRIQGHMRCEVNINDQN VITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVXTG VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPG YFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLM GFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA IGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLM PGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAP RWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE QPLEILRTLHSFDPCLACSTH S:  KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLD YDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI QSGHGCLGCAENGFWDRGSFYSRV T:  KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLD YDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQA ARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQ SWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI QSGHGCLGCAENGFWDRGSFYSRV Description Functional site 1) chain S residue 187 type sequence H description binding site for residue SF4 S 401 source : AC1 2) chain S residue 190 type sequence C description binding site for residue SF4 S 401 source : AC1 3) chain S residue 193 type sequence R description binding site for residue SF4 S 401 source : AC1 4) chain S residue 215 type sequence C description binding site for residue SF4 S 401 source : AC1 5) chain S residue 216 type sequence L description binding site for residue SF4 S 401 source : AC1 6) chain S residue 221 type sequence C description binding site for residue SF4 S 401 source : AC1 7) chain S residue 243 type sequence I description binding site for residue SF4 S 401 source : AC1 8) chain L residue 226 type sequence K description binding site for residue F3S S 402 source : AC2 9) chain S residue 226 type sequence T description binding site for residue F3S S 402 source : AC2 10) chain S residue 228 type sequence N description binding site for residue F3S S 402 source : AC2 11) chain S residue 230 type sequence C description binding site for residue F3S S 402 source : AC2 12) chain S residue 235 type sequence W description binding site for residue F3S S 402 source : AC2 13) chain S residue 249 type sequence C description binding site for residue F3S S 402 source : AC2 14) chain S residue 250 type sequence L description binding site for residue F3S S 402 source : AC2 15) chain S residue 252 type sequence C description binding site for residue F3S S 402 source : AC2 16) chain S residue 16 type sequence E description binding site for residue SF3 S 403 source : AC3 17) chain S residue 17 type sequence C description binding site for residue SF3 S 403 source : AC3 18) chain S residue 18 type sequence T description binding site for residue SF3 S 403 source : AC3 19) chain S residue 19 type sequence C description binding site for residue SF3 S 403 source : AC3 20) chain S residue 20 type sequence C description binding site for residue SF3 S 403 source : AC3 21) chain S residue 76 type sequence E description binding site for residue SF3 S 403 source : AC3 22) chain S residue 114 type sequence T description binding site for residue SF3 S 403 source : AC3 23) chain S residue 115 type sequence C description binding site for residue SF3 S 403 source : AC3 24) chain S residue 120 type sequence C description binding site for residue SF3 S 403 source : AC3 25) chain S residue 148 type sequence G description binding site for residue SF3 S 403 source : AC3 26) chain S residue 149 type sequence C description binding site for residue SF3 S 403 source : AC3 27) chain S residue 7 type sequence I description binding site for residue LMT S 404 source : AC4 28) chain S residue 11 type sequence W description binding site for residue LMT S 404 source : AC4 29) chain S residue 163 type sequence M description binding site for residue LMT S 404 source : AC4 30) chain S residue 118 type sequence W description binding site for residue CL S 405 source : AC5 31) chain S residue 120 type sequence C description binding site for residue CL S 405 source : AC5 32) chain S residue 256 type sequence G description binding site for residue CL S 405 source : AC5 33) chain M residue 355 type sequence R description binding site for residue SO4 S 406 source : AC6 34) chain M residue 373 type sequence W description binding site for residue SO4 S 406 source : AC6 35) chain S residue 125 type sequence R description binding site for residue SO4 S 406 source : AC6 36) chain S residue 126 type sequence P description binding site for residue SO4 S 406 source : AC6 37) chain L residue 482 type sequence L description binding site for residue SO4 L 601 source : AC7 38) chain L residue 483 type sequence A description binding site for residue SO4 L 601 source : AC7 39) chain S residue 211 type sequence R description binding site for residue SO4 L 601 source : AC7 40) chain L residue 79 type sequence X description binding site for residue FCO L 602 source : AC8 41) chain L residue 82 type sequence V description binding site for residue FCO L 602 source : AC8 42) chain L residue 83 type sequence H description binding site for residue FCO L 602 source : AC8 43) chain L residue 507 type sequence A description binding site for residue FCO L 602 source : AC8 44) chain L residue 508 type sequence P description binding site for residue FCO L 602 source : AC8 45) chain L residue 509 type sequence R description binding site for residue FCO L 602 source : AC8 46) chain L residue 512 type sequence L description binding site for residue FCO L 602 source : AC8 47) chain L residue 530 type sequence V description binding site for residue FCO L 602 source : AC8 48) chain L residue 531 type sequence P description binding site for residue FCO L 602 source : AC8 49) chain L residue 532 type sequence T description binding site for residue FCO L 602 source : AC8 50) chain L residue 579 type sequence C description binding site for residue FCO L 602 source : AC8 51) chain L residue 76 type sequence C description binding site for residue NI L 603 source : AC9 52) chain L residue 79 type sequence X description binding site for residue NI L 603 source : AC9 53) chain L residue 576 type sequence C description binding site for residue NI L 603 source : AC9 54) chain L residue 579 type sequence C description binding site for residue NI L 603 source : AC9 55) chain L residue 57 type sequence E description binding site for residue MG L 604 source : AD1 56) chain L residue 528 type sequence C description binding site for residue MG L 604 source : AD1 57) chain L residue 582 type sequence H description binding site for residue MG L 604 source : AD1 58) chain L residue 97 type sequence I description binding site for residue LI L 605 source : AD2 59) chain T residue 187 type sequence H description binding site for residue SF4 T 401 source : AD3 60) chain T residue 190 type sequence C description binding site for residue SF4 T 401 source : AD3 61) chain T residue 193 type sequence R description binding site for residue SF4 T 401 source : AD3 62) chain T residue 215 type sequence C description binding site for residue SF4 T 401 source : AD3 63) chain T residue 216 type sequence L description binding site for residue SF4 T 401 source : AD3 64) chain T residue 221 type sequence C description binding site for residue SF4 T 401 source : AD3 65) chain M residue 226 type sequence K description binding site for residue F3S T 402 source : AD4 66) chain T residue 226 type sequence T description binding site for residue F3S T 402 source : AD4 67) chain T residue 228 type sequence N description binding site for residue F3S T 402 source : AD4 68) chain T residue 230 type sequence C description binding site for residue F3S T 402 source : AD4 69) chain T residue 235 type sequence W description binding site for residue F3S T 402 source : AD4 70) chain T residue 242 type sequence P description binding site for residue F3S T 402 source : AD4 71) chain T residue 249 type sequence C description binding site for residue F3S T 402 source : AD4 72) chain T residue 250 type sequence L description binding site for residue F3S T 402 source : AD4 73) chain T residue 252 type sequence C description binding site for residue F3S T 402 source : AD4 74) chain T residue 16 type sequence E description binding site for residue SF3 T 403 source : AD5 75) chain T residue 17 type sequence C description binding site for residue SF3 T 403 source : AD5 76) chain T residue 18 type sequence T description binding site for residue SF3 T 403 source : AD5 77) chain T residue 19 type sequence C description binding site for residue SF3 T 403 source : AD5 78) chain T residue 20 type sequence C description binding site for residue SF3 T 403 source : AD5 79) chain T residue 76 type sequence E description binding site for residue SF3 T 403 source : AD5 80) chain T residue 114 type sequence T description binding site for residue SF3 T 403 source : AD5 81) chain T residue 115 type sequence C description binding site for residue SF3 T 403 source : AD5 82) chain T residue 120 type sequence C description binding site for residue SF3 T 403 source : AD5 83) chain T residue 148 type sequence G description binding site for residue SF3 T 403 source : AD5 84) chain T residue 149 type sequence C description binding site for residue SF3 T 403 source : AD5 85) chain T residue 7 type sequence I description binding site for residue LMT T 404 source : AD6 86) chain T residue 11 type sequence W description binding site for residue LMT T 404 source : AD6 87) chain T residue 163 type sequence M description binding site for residue LMT T 404 source : AD6 88) chain T residue 118 type sequence W description binding site for residue CL T 405 source : AD7 89) chain T residue 120 type sequence C description binding site for residue CL T 405 source : AD7 90) chain T residue 256 type sequence G description binding site for residue CL T 405 source : AD7 91) chain T residue 12 type sequence I description binding site for residue CL T 406 source : AD8 92) chain T residue 13 type sequence H description binding site for residue CL T 406 source : AD8 93) chain T residue 46 type sequence D description binding site for residue CL T 406 source : AD8 94) chain T residue 173 type sequence D description binding site for residue SO4 T 407 source : AD9 95) chain T residue 174 type sequence R description binding site for residue SO4 T 407 source : AD9 96) chain M residue 79 type sequence X description binding site for residue FCO M 601 source : AE1 97) chain M residue 82 type sequence V description binding site for residue FCO M 601 source : AE1 98) chain M residue 83 type sequence H description binding site for residue FCO M 601 source : AE1 99) chain M residue 507 type sequence A description binding site for residue FCO M 601 source : AE1 100) chain M residue 508 type sequence P description binding site for residue FCO M 601 source : AE1 101) chain M residue 509 type sequence R description binding site for residue FCO M 601 source : AE1 102) chain M residue 512 type sequence L description binding site for residue FCO M 601 source : AE1 103) chain M residue 530 type sequence V description binding site for residue FCO M 601 source : AE1 104) chain M residue 531 type sequence P description binding site for residue FCO M 601 source : AE1 105) chain M residue 532 type sequence T description binding site for residue FCO M 601 source : AE1 106) chain M residue 579 type sequence C description binding site for residue FCO M 601 source : AE1 107) chain M residue 76 type sequence C description binding site for residue NI M 602 source : AE2 108) chain M residue 79 type sequence X description binding site for residue NI M 602 source : AE2 109) chain M residue 576 type sequence C description binding site for residue NI M 602 source : AE2 110) chain M residue 579 type sequence C description binding site for residue NI M 602 source : AE2 111) chain M residue 57 type sequence E description binding site for residue MG M 603 source : AE3 112) chain M residue 528 type sequence C description binding site for residue MG M 603 source : AE3 113) chain M residue 582 type sequence H description binding site for residue MG M 603 source : AE3 114) chain M residue 394 type sequence R description binding site for residue SO4 M 604 source : AE4 115) chain S residue 125 type sequence R description binding site for residue SO4 M 604 source : AE4 116) chain M residue 350 type sequence D description binding site for residue TRS M 606 source : AE6 117) chain M residue 359 type sequence D description binding site for residue TRS M 606 source : AE6 118) chain M residue 392 type sequence Q description binding site for residue TRS M 606 source : AE6 119) chain M residue 393 type sequence E description binding site for residue TRS M 606 source : AE6 120) chain M residue 394 type sequence R description binding site for residue TRS M 606 source : AE6 121) chain L residue 76 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 122) chain L residue 79 type BINDING sequence X description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 123) chain L residue 576 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 124) chain L residue 579 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 125) chain M residue 76 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 126) chain M residue 79 type BINDING sequence X description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 127) chain M residue 576 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 128) chain M residue 579 type BINDING sequence C description BINDING => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 129) chain S residue 17 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 130) chain S residue 249 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 131) chain S residue 252 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 132) chain T residue 17 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 133) chain T residue 20 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 134) chain T residue 115 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 135) chain T residue 149 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 136) chain T residue 187 type BINDING sequence H description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 137) chain T residue 190 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 138) chain T residue 215 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 139) chain T residue 221 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 140) chain S residue 20 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 141) chain T residue 230 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 142) chain T residue 249 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 143) chain T residue 252 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 144) chain S residue 115 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 145) chain S residue 149 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 146) chain S residue 187 type BINDING sequence H description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 147) chain S residue 190 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 148) chain S residue 215 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 149) chain S residue 221 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 150) chain S residue 230 type BINDING sequence C description BINDING => ECO:0000250|UniProtKB:P21853 source Swiss-Prot : SWS_FT_FI4 151) chain L residue 54-79 type prosite sequence RGLEIILQGRDPRDAWAFVERICGVX description NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEiilqgrdprdawafvERiCGVC source prosite : PS00507 152) chain L residue 573-582 type prosite sequence FDPCLACSTH description NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCLACst.H source prosite : PS00508

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