eF-site ID 5kzp-ABCDEFGHIJKL PDB Code 5kzp Chain A, B, C, D, E, F, G, H, I, J, K, L click to enlarge Title Structure of the HCV1-C1 Antibody-Antigen Complex Classification VIRAL PROTEIN/IMMUNE SYSTEM Compound HCV1-C1 Antibody Fab Heavy Chain Source (5KZP) Sequence A:  CQLINTNGSWHINCK B:  CQLINTNGSWHINCK C:  CQLINTNGSWHINCK D:  CQLINTNGSWHINCK E:  EVQLLESGGGVVQPGRSLRLSCTASGFTFNNYGMHWVRQT PGKGLEWLAVIWFDENNKYYADSVRGRFTISRDNSKNTLF LQMNSLKTEDTAMYYCARDISLVRDAFIYFDFWGLGTLVT VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG TQTYICNVNHKPSNTKVDKKVEPKSC F:  EVQLLESGGGVVQPGRSLRLSCTASGFTFNNYGMHWVRQT PGKGLEWLAVIWFDENNKYYADSVRGRFTISRDNSKNTLF LQMNSLKTEDTAMYYCARDISLVRDAFIYFDFWGLGTLVT VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG TQTYICNVNHKPSNTKVDKKVEPKSC G:  EVQLLESGGGVVQPGRSLRLSCTASGFTFNNYGMHWVRQT PGKGLEWLAVIWFDENNKYYADSVRGRFTISRDNSKNTLF LQMNSLKTEDTAMYYCARDISLVRDAFIYFDFWGLGTLVT VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG TQTYICNVNHKPSNTKVDKKVEPKSC H:  EVQLLESGGGVVQPGRSLRLSCTASGFTFNNYGMHWVRQT PGKGLEWLAVIWFDENNKYYADSVRGRFTISRDNSKNTLF LQMNSLKTEDTAMYYCARDISLVRDAFIYFDFWGLGTLVT VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG TQTYICNVNHKPSNTKVDKKVEPKSC I:  ELTLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKP GQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEP EDFAVYYCQQRSNWITFGQGTRLEIKRTVAAPSVFIFPPS DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQGL SSPVTKSFNRGE J:  ELTLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKP GQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEP EDFAVYYCQQRSNWITFGQGTRLEIKRTVAAPSVFIFPPS DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQGL SSPVTKSFNRGE K:  ELTLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKP GQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEP EDFAVYYCQQRSNWITFGQGTRLEIKRTVAAPSVFIFPPS DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQGL SSPVTKSFNRG L:  ELTLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKP GQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEP EDFAVYYCQQRSNWITFGQGTRLEIKRTVAAPSVFIFPPS DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQGL SSPVTKSFNRGE Description (1)  HCV1-C1 Antibody Fab Heavy Chain, HCV1-C1 Antibody Fab Light Chain, C1 Epitope Functional site 1) chain E residue 104 type sequence R description binding site for residue ACT H 301 source : AC1 2) chain H residue 101 type sequence S description binding site for residue ACT H 301 source : AC1 3) chain H residue 102 type sequence L description binding site for residue ACT H 301 source : AC1 4) chain H residue 103 type sequence V description binding site for residue ACT H 301 source : AC1 5) chain H residue 104 type sequence R description binding site for residue ACT H 301 source : AC1 6) chain H residue 105 type sequence D description binding site for residue CA H 302 source : AC2 7) chain L residue 50 type sequence D description binding site for residue CA H 302 source : AC2 8) chain H residue 62 type sequence D description binding site for residue CA H 303 source : AC3 9) chain L residue 165 type sequence E description binding site for residue CA L 301 source : AC4 10) chain L residue 53 type sequence N description binding site for residue CA L 302 source : AC5 11) chain L residue 54 type sequence R description binding site for residue CA L 302 source : AC5 12) chain A residue 420 type sequence W description binding site for residue CA A 501 source : AC6 13) chain E residue 101 type sequence S description binding site for residue ACT E 301 source : AC7 14) chain E residue 102 type sequence L description binding site for residue ACT E 301 source : AC7 15) chain E residue 103 type sequence V description binding site for residue ACT E 301 source : AC7 16) chain E residue 104 type sequence R description binding site for residue ACT E 301 source : AC7 17) chain H residue 104 type sequence R description binding site for residue ACT E 301 source : AC7 18) chain E residue 105 type sequence D description binding site for residue CA E 302 source : AC8 19) chain I residue 50 type sequence D description binding site for residue CA E 302 source : AC8 20) chain I residue 53 type sequence N description binding site for residue CA I 301 source : AC9 21) chain I residue 54 type sequence R description binding site for residue CA I 301 source : AC9 22) chain F residue 101 type sequence S description binding site for residue ACT F 301 source : AD1 23) chain F residue 102 type sequence L description binding site for residue ACT F 301 source : AD1 24) chain F residue 103 type sequence V description binding site for residue ACT F 301 source : AD1 25) chain F residue 104 type sequence R description binding site for residue ACT F 301 source : AD1 26) chain G residue 104 type sequence R description binding site for residue ACT F 301 source : AD1 27) chain F residue 105 type sequence D description binding site for residue CA F 302 source : AD2 28) chain J residue 50 type sequence D description binding site for residue CA F 302 source : AD2 29) chain F residue 62 type sequence D description binding site for residue CA F 304 source : AD4 30) chain F residue 113 type sequence W description binding site for residue CA F 305 source : AD5 31) chain J residue 44 type sequence P description binding site for residue CA F 305 source : AD5 32) chain J residue 53 type sequence N description binding site for residue CA J 301 source : AD6 33) chain J residue 54 type sequence R description binding site for residue CA J 301 source : AD6 34) chain J residue 164 type sequence T description binding site for residue CA J 302 source : AD7 35) chain J residue 165 type sequence E description binding site for residue CA J 302 source : AD7 36) chain J residue 167 type sequence D description binding site for residue CA J 302 source : AD7 37) chain C residue 417 type sequence N description binding site for residue CA C 501 source : AD8 38) chain J residue 1 type sequence E description binding site for residue CA C 501 source : AD8 39) chain J residue 93 type sequence N description binding site for residue CA C 501 source : AD8 40) chain L residue 18 type sequence R description binding site for residue CA C 501 source : AD8 41) chain F residue 104 type sequence R description binding site for residue ACT G 301 source : AD9 42) chain G residue 101 type sequence S description binding site for residue ACT G 301 source : AD9 43) chain G residue 102 type sequence L description binding site for residue ACT G 301 source : AD9 44) chain G residue 103 type sequence V description binding site for residue ACT G 301 source : AD9 45) chain G residue 104 type sequence R description binding site for residue ACT G 301 source : AD9 46) chain K residue 53 type sequence N description binding site for residue CA G 302 source : AE1 47) chain K residue 54 type sequence R description binding site for residue CA G 302 source : AE1 48) chain G residue 87 type sequence K description binding site for residue CA G 303 source : AE2 49) chain K residue 6 type sequence Q description binding site for residue CA K 301 source : AE3 50) chain K residue 7 type sequence S description binding site for residue CA K 301 source : AE3 51) chain K residue 22 type sequence S description binding site for residue CA K 301 source : AE3 52) chain K residue 102 type sequence T description binding site for residue CA K 301 source : AE3 53) chain G residue 105 type sequence D description binding site for residue CA K 302 source : AE4 54) chain K residue 50 type sequence D description binding site for residue CA K 302 source : AE4 55) chain K residue 105 type sequence E description binding site for residue CA K 303 source : AE5 56) chain K residue 142 type sequence R description binding site for residue CA K 303 source : AE5 57) chain K residue 143 type sequence E description binding site for residue CA K 303 source : AE5 58) chain E residue 65 type sequence R description binding site for residue CA K 304 source : AE6 59) chain K residue 1 type sequence E description binding site for residue CA K 304 source : AE6 60) chain K residue 26 type sequence S description binding site for residue CA K 304 source : AE6 61) chain K residue 27 type sequence Q description binding site for residue CA K 304 source : AE6 62) chain G residue 84 type sequence N description binding site for residue CA K 305 source : AE7 63) chain K residue 24 type sequence R description binding site for residue CA K 305 source : AE7 64) chain K residue 69 type sequence T description binding site for residue CA K 305 source : AE7 65) chain K residue 70 type sequence D description binding site for residue CA K 305 source : AE7 66) chain H residue 204-210 type prosite sequence YICNVNH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH source prosite : PS00290 67) chain L residue 192-198 type prosite sequence YACEVTH description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH source prosite : PS00290 68) chain A residue 417 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 69) chain B residue 417 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 70) chain C residue 417 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 71) chain D residue 417 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 72) chain A residue 423 type CARBOHYD sequence N description N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000250|UniProtKB:P27958 source Swiss-Prot : SWS_FT_FI2 73) chain B residue 423 type CARBOHYD sequence N description N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000250|UniProtKB:P27958 source Swiss-Prot : SWS_FT_FI2 74) chain C residue 423 type CARBOHYD sequence N description N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000250|UniProtKB:P27958 source Swiss-Prot : SWS_FT_FI2 75) chain D residue 423 type CARBOHYD sequence N description N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000250|UniProtKB:P27958 source Swiss-Prot : SWS_FT_FI2

Display surface Download Links