eF-site ID 5ksi-D PDB Code 5ksi Chain D click to enlarge Title Crystal structure of deoxygenated hemoglobin in complex with sphingosine phosphate and 2,3-Bisphosphoglycerate Classification OXYGEN TRANSPORT Compound Hemoglobin subunit alpha Source ORGANISM_COMMON: Human; ORGANISM_SCIENTIFIC: Homo sapiens; Sequence D:  VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQR FFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDN LKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGK EFTPPVQAAYQKVVAGVANALAHKYH Description Functional site 1) chain D residue 17 type sequence K description binding site for residue HEM A 201 source : AC1 2) chain D residue 40 type sequence R description binding site for residue S1P A 203 source : AC3 3) chain D residue 41 type sequence F description binding site for residue S1P A 203 source : AC3 4) chain D residue 96 type sequence L description binding site for residue S1P A 203 source : AC3 5) chain D residue 97 type sequence H description binding site for residue S1P A 203 source : AC3 6) chain D residue 108 type sequence N description binding site for residue S1P C 202 source : AC7 7) chain D residue 131 type sequence Q description binding site for residue S1P C 202 source : AC7 8) chain D residue 41 type sequence F description binding site for residue HEM D 201 source : AC9 9) chain D residue 42 type sequence F description binding site for residue HEM D 201 source : AC9 10) chain D residue 63 type sequence H description binding site for residue HEM D 201 source : AC9 11) chain D residue 66 type sequence K description binding site for residue HEM D 201 source : AC9 12) chain D residue 67 type sequence V description binding site for residue HEM D 201 source : AC9 13) chain D residue 91 type sequence L description binding site for residue HEM D 201 source : AC9 14) chain D residue 92 type sequence H description binding site for residue HEM D 201 source : AC9 15) chain D residue 96 type sequence L description binding site for residue HEM D 201 source : AC9 16) chain D residue 102 type sequence N description binding site for residue HEM D 201 source : AC9 17) chain D residue 103 type sequence F description binding site for residue HEM D 201 source : AC9 18) chain D residue 141 type sequence L description binding site for residue HEM D 201 source : AC9 19) chain D residue 40 type sequence R description binding site for residue S1P D 202 source : AD1 20) chain D residue 41 type sequence F description binding site for residue S1P D 202 source : AD1 21) chain D residue 96 type sequence L description binding site for residue S1P D 202 source : AD1 22) chain D residue 97 type sequence H description binding site for residue S1P D 202 source : AD1 23) chain D residue 120 type sequence K description binding site for residue S1P D 202 source : AD1 24) chain D residue 1 type sequence V description binding site for residue DG2 D 203 source : AD2 25) chain D residue 82 type sequence K description binding site for residue DG2 D 203 source : AD2 26) chain D residue 144 type MOD_RES sequence K description N6-acetyllysine; alternate => ECO:0000269|PubMed:4531009 source Swiss-Prot : SWS_FT_FI11 27) chain D residue 12 type MOD_RES sequence T description Phosphothreonine => ECO:0007744|PubMed:24275569 source Swiss-Prot : SWS_FT_FI8 28) chain D residue 50 type MOD_RES sequence T description Phosphothreonine => ECO:0007744|PubMed:24275569 source Swiss-Prot : SWS_FT_FI8 29) chain D residue 87 type MOD_RES sequence T description Phosphothreonine => ECO:0007744|PubMed:24275569 source Swiss-Prot : SWS_FT_FI8 30) chain D residue 59 type MOD_RES sequence K description N6-acetyllysine => ECO:0000269|PubMed:4531009 source Swiss-Prot : SWS_FT_FI9 31) chain D residue 82 type MOD_RES sequence K description N6-acetyllysine => ECO:0000269|PubMed:4531009 source Swiss-Prot : SWS_FT_FI9 32) chain D residue 1 type CARBOHYD sequence V description N-linked (Glc) (glycation) valine; in Hb A1c => ECO:0000269|PubMed:635569 source Swiss-Prot : SWS_FT_FI12 33) chain D residue 8 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI13 34) chain D residue 17 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI13 35) chain D residue 66 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI13 36) chain D residue 120 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI13 37) chain D residue 144 type CARBOHYD sequence K description N-linked (Glc) (glycation) lysine; alternate => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI14 38) chain D residue 92 type BINDING sequence H description proximal binding residue source Swiss-Prot : SWS_FT_FI3 39) chain D residue 7 type SITE sequence E description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 40) chain D residue 25 type SITE sequence G description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 41) chain D residue 29 type SITE sequence G description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 42) chain D residue 35 type SITE sequence Y description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 43) chain D residue 37 type SITE sequence W description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 44) chain D residue 45 type SITE sequence F description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 45) chain D residue 52 type SITE sequence D description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 46) chain D residue 56 type SITE sequence G description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 47) chain D residue 71 type SITE sequence F description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 48) chain D residue 74 type SITE sequence G description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 49) chain D residue 84 type SITE sequence T description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 50) chain D residue 92 type SITE sequence H description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 51) chain D residue 104 type SITE sequence R description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 52) chain D residue 110 type SITE sequence L description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 53) chain D residue 119 type SITE sequence G description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 54) chain D residue 122 type SITE sequence F description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 55) chain D residue 128 type SITE sequence A description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 56) chain D residue 140 type SITE sequence A description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 57) chain D residue 144 type SITE sequence K description (Microbial infection) Cleavage; by N.americanus apr-2 => ECO:0000269|PubMed:12552433 source Swiss-Prot : SWS_FT_FI4 58) chain D residue 59 type SITE sequence K description Not glycated => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI5 59) chain D residue 82 type SITE sequence K description Not glycated => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI5 60) chain D residue 95 type SITE sequence K description Not glycated => ECO:0000269|PubMed:7358733 source Swiss-Prot : SWS_FT_FI5 61) chain D residue 1 type MOD_RES sequence V description N-pyruvate 2-iminyl-valine; in Hb A1b source Swiss-Prot : SWS_FT_FI6 62) chain D residue 93 type MOD_RES sequence C description S-nitrosocysteine => ECO:0000269|PubMed:8637569, ECO:0000269|PubMed:9843411 source Swiss-Prot : SWS_FT_FI10 63) chain D residue 9 type MOD_RES sequence S description Phosphoserine => ECO:0007744|PubMed:24275569 source Swiss-Prot : SWS_FT_FI7 64) chain D residue 44 type MOD_RES sequence S description Phosphoserine => ECO:0007744|PubMed:24275569 source Swiss-Prot : SWS_FT_FI7 65) chain D residue 1 type BINDING sequence V description source Swiss-Prot : SWS_FT_FI1 66) chain D residue 2 type BINDING sequence H description source Swiss-Prot : SWS_FT_FI1 67) chain D residue 82 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI1 68) chain D residue 143 type BINDING sequence H description source Swiss-Prot : SWS_FT_FI1 69) chain D residue 63 type BINDING sequence H description distal binding residue source Swiss-Prot : SWS_FT_FI2

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