eF-site ID 5kj8-F
PDB Code 5kj8
Chain F

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Title Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from synchrotron diffraction
Classification ENDOCYTOSIS,EXOCYTOSIS
Compound Vesicle-associated membrane protein 3
Source Rattus norvegicus (Rat) (SYT1_RAT)
Sequence F:  KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPY
VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG
GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR
DLQSAEKEEQLGDICFSLRYVPTAGKLTVVILEAKNLKKM
DGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS
FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG
AELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAV
Description


Functional site

1) chain F
residue 172
type
sequence D
description binding site for residue CA F 501
source : AC6

2) chain F
residue 178
type
sequence D
description binding site for residue CA F 501
source : AC6

3) chain F
residue 230
type
sequence D
description binding site for residue CA F 501
source : AC6

4) chain F
residue 231
type
sequence F
description binding site for residue CA F 501
source : AC6

5) chain F
residue 172
type
sequence D
description binding site for residue CA F 502
source : AC7

6) chain F
residue 230
type
sequence D
description binding site for residue CA F 502
source : AC7

7) chain F
residue 232
type
sequence D
description binding site for residue CA F 502
source : AC7

8) chain F
residue 324
type
sequence K
description binding site for residue CA F 502
source : AC7

9) chain F
residue 303
type
sequence D
description binding site for residue CA F 503
source : AC8

10) chain F
residue 309
type
sequence D
description binding site for residue CA F 503
source : AC8

11) chain F
residue 363
type
sequence D
description binding site for residue CA F 503
source : AC8

12) chain F
residue 364
type
sequence Y
description binding site for residue CA F 503
source : AC8

13) chain F
residue 172
type
sequence D
description binding site for residue CA F 504
source : AC9

14) chain F
residue 176
type
sequence T
description binding site for residue CA F 504
source : AC9

15) chain F
residue 177
type
sequence S
description binding site for residue CA F 504
source : AC9

16) chain F
residue 178
type
sequence D
description binding site for residue CA F 504
source : AC9

17) chain F
residue 171
type BINDING
sequence L
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

18) chain F
residue 172
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

19) chain F
residue 178
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

20) chain F
residue 230
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

21) chain F
residue 231
type BINDING
sequence F
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

22) chain F
residue 232
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

23) chain F
residue 235
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

24) chain F
residue 236
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

25) chain F
residue 238
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

26) chain F
residue 303
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

27) chain F
residue 309
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

28) chain F
residue 363
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

29) chain F
residue 365
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

30) chain F
residue 371
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

31) chain F
residue 229
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P46096
source Swiss-Prot : SWS_FT_FI2

32) chain F
residue 264
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P46096
source Swiss-Prot : SWS_FT_FI3

33) chain F
residue 342
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:22673903
source Swiss-Prot : SWS_FT_FI4

34) chain F
residue 344
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:22673903
source Swiss-Prot : SWS_FT_FI4


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