eF-site ID 5kai-a PDB Code 5kai Chain a click to enlarge Title NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A resolution Classification ELECTRON TRANSPORT Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 28 type sequence L description binding site for residue LMG a 701 source : AK7 2) chain a residue 45 type sequence T description binding site for residue LMG a 701 source : AK7 3) chain a residue 170 type sequence D description binding site for residue OEX a 702 source : AK8 4) chain a residue 189 type sequence E description binding site for residue OEX a 702 source : AK8 5) chain a residue 332 type sequence H description binding site for residue OEX a 702 source : AK8 6) chain a residue 333 type sequence E description binding site for residue OEX a 702 source : AK8 7) chain a residue 337 type sequence H description binding site for residue OEX a 702 source : AK8 8) chain a residue 342 type sequence D description binding site for residue OEX a 702 source : AK8 9) chain a residue 344 type sequence A description binding site for residue OEX a 702 source : AK8 10) chain a residue 215 type sequence H description binding site for residue FE2 a 703 source : AK9 11) chain a residue 272 type sequence H description binding site for residue FE2 a 703 source : AK9 12) chain a residue 181 type sequence N description binding site for residue CL a 704 source : AL1 13) chain a residue 332 type sequence H description binding site for residue CL a 704 source : AL1 14) chain a residue 333 type sequence E description binding site for residue CL a 704 source : AL1 15) chain a residue 337 type sequence H description binding site for residue CL a 705 source : AL2 16) chain a residue 338 type sequence N description binding site for residue CL a 705 source : AL2 17) chain a residue 339 type sequence F description binding site for residue CL a 705 source : AL2 18) chain a residue 215 type sequence H description binding site for residue BCT a 706 source : AL3 19) chain a residue 244 type sequence E description binding site for residue BCT a 706 source : AL3 20) chain a residue 246 type sequence Y description binding site for residue BCT a 706 source : AL3 21) chain a residue 272 type sequence H description binding site for residue BCT a 706 source : AL3 22) chain a residue 147 type sequence Y description binding site for residue CLA a 707 source : AL4 23) chain a residue 150 type sequence P description binding site for residue CLA a 707 source : AL4 24) chain a residue 153 type sequence S description binding site for residue CLA a 707 source : AL4 25) chain a residue 157 type sequence V description binding site for residue CLA a 707 source : AL4 26) chain a residue 183 type sequence M description binding site for residue CLA a 707 source : AL4 27) chain a residue 186 type sequence F description binding site for residue CLA a 707 source : AL4 28) chain a residue 192 type sequence I description binding site for residue CLA a 707 source : AL4 29) chain a residue 193 type sequence L description binding site for residue CLA a 707 source : AL4 30) chain a residue 198 type sequence H description binding site for residue CLA a 707 source : AL4 31) chain a residue 201 type sequence G description binding site for residue CLA a 707 source : AL4 32) chain a residue 206 type sequence F description binding site for residue CLA a 707 source : AL4 33) chain a residue 286 type sequence T description binding site for residue CLA a 707 source : AL4 34) chain a residue 290 type sequence I description binding site for residue CLA a 707 source : AL4 35) chain a residue 199 type sequence Q description binding site for residue CLA a 708 source : AL5 36) chain a residue 202 type sequence V description binding site for residue CLA a 708 source : AL5 37) chain a residue 203 type sequence A description binding site for residue CLA a 708 source : AL5 38) chain a residue 207 type sequence G description binding site for residue CLA a 708 source : AL5 39) chain a residue 210 type sequence L description binding site for residue CLA a 708 source : AL5 40) chain a residue 278 type sequence W description binding site for residue CLA a 708 source : AL5 41) chain a residue 41 type sequence L description binding site for residue PHO a 709 source : AL6 42) chain a residue 44 type sequence A description binding site for residue PHO a 709 source : AL6 43) chain a residue 45 type sequence T description binding site for residue PHO a 709 source : AL6 44) chain a residue 119 type sequence F description binding site for residue PHO a 709 source : AL6 45) chain a residue 126 type sequence Y description binding site for residue PHO a 709 source : AL6 46) chain a residue 130 type sequence Q description binding site for residue PHO a 709 source : AL6 47) chain a residue 147 type sequence Y description binding site for residue PHO a 709 source : AL6 48) chain a residue 279 type sequence P description binding site for residue PHO a 709 source : AL6 49) chain a residue 283 type sequence V description binding site for residue PHO a 709 source : AL6 50) chain a residue 206 type sequence F description binding site for residue PHO a 710 source : AL7 51) chain a residue 210 type sequence L description binding site for residue PHO a 710 source : AL7 52) chain a residue 214 type sequence M description binding site for residue PHO a 710 source : AL7 53) chain a residue 258 type sequence L description binding site for residue PHO a 710 source : AL7 54) chain a residue 36 type sequence I description binding site for residue CLA a 711 source : AL8 55) chain a residue 93 type sequence F description binding site for residue CLA a 711 source : AL8 56) chain a residue 95 type sequence P description binding site for residue CLA a 711 source : AL8 57) chain a residue 96 type sequence I description binding site for residue CLA a 711 source : AL8 58) chain a residue 114 type sequence L description binding site for residue CLA a 711 source : AL8 59) chain a residue 118 type sequence H description binding site for residue CLA a 711 source : AL8 60) chain a residue 42 type sequence L description binding site for residue BCR a 712 source : AL9 61) chain a residue 43 type sequence A description binding site for residue BCR a 712 source : AL9 62) chain a residue 214 type sequence M description binding site for residue PL9 a 713 source : AM1 63) chain a residue 215 type sequence H description binding site for residue PL9 a 713 source : AM1 64) chain a residue 218 type sequence L description binding site for residue PL9 a 713 source : AM1 65) chain a residue 255 type sequence F description binding site for residue PL9 a 713 source : AM1 66) chain a residue 264 type sequence S description binding site for residue PL9 a 713 source : AM1 67) chain a residue 265 type sequence F description binding site for residue PL9 a 713 source : AM1 68) chain a residue 271 type sequence L description binding site for residue PL9 a 713 source : AM1 69) chain a residue 200 type sequence L description binding site for residue SQD a 714 source : AM2 70) chain a residue 203 type sequence A description binding site for residue SQD a 714 source : AM2 71) chain a residue 267 type sequence N description binding site for residue SQD a 714 source : AM2 72) chain a residue 270 type sequence S description binding site for residue SQD a 714 source : AM2 73) chain a residue 274 type sequence F description binding site for residue SQD a 714 source : AM2 74) chain a residue 278 type sequence W description binding site for residue SQD a 714 source : AM2 75) chain a residue 281 type sequence V description binding site for residue SQD a 714 source : AM2 76) chain a residue 93 type sequence F description binding site for residue LMG a 715 source : AM3 77) chain a residue 97 type sequence W description binding site for residue LMG a 715 source : AM3 78) chain a residue 98 type sequence E description binding site for residue LMG a 715 source : AM3 79) chain a residue 172 type sequence M description binding site for residue CLA a 719 source : AM4 80) chain a residue 176 type sequence I description binding site for residue CLA a 719 source : AM4 81) chain a residue 179 type sequence T description binding site for residue CLA a 719 source : AM4 82) chain a residue 180 type sequence F description binding site for residue CLA a 719 source : AM4 83) chain a residue 183 type sequence M description binding site for residue CLA a 719 source : AM4 84) chain a residue 140 type sequence R description binding site for residue LHG a 720 source : AM5 85) chain a residue 142 type sequence W description binding site for residue LHG a 720 source : AM5 86) chain a residue 273 type sequence F description binding site for residue LHG a 720 source : AM5 87) chain a residue 232 type sequence S description binding site for residue LHG b 629 source : AP3 88) chain a residue 234 type sequence N description binding site for residue LHG b 629 source : AP3 89) chain a residue 121 type sequence L description binding site for residue CLA c 505 source : AP8 90) chain a residue 131 type sequence W description binding site for residue CLA c 505 source : AP8 91) chain a residue 155 type sequence F description binding site for residue DGD c 516 source : AR1 92) chain a residue 163 type sequence I description binding site for residue DGD c 516 source : AR1 93) chain a residue 197 type sequence F description binding site for residue DGD c 517 source : AR2 94) chain a residue 199 type sequence Q description binding site for residue DGD c 518 source : AR3 95) chain a residue 200 type sequence L description binding site for residue DGD c 518 source : AR3 96) chain a residue 278 type sequence W description binding site for residue DGD c 518 source : AR3 97) chain a residue 300 type sequence F description binding site for residue DGD c 518 source : AR3 98) chain a residue 301 type sequence N description binding site for residue DGD c 518 source : AR3 99) chain a residue 305 type sequence S description binding site for residue DGD c 518 source : AR3 100) chain a residue 183 type sequence M description binding site for residue CLA d 402 source : AR6 101) chain a residue 52 type sequence F description binding site for residue PL9 d 405 source : AR9 102) chain a residue 232 type sequence S description binding site for residue LHG d 406 source : AS1 103) chain a residue 234 type sequence N description binding site for residue LHG d 406 source : AS1 104) chain a residue 258 type sequence L description binding site for residue LHG e 101 source : AS4 105) chain a residue 260 type sequence F description binding site for residue LHG e 101 source : AS4 106) chain a residue 262 type sequence Y description binding site for residue LHG e 101 source : AS4 107) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 108) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 109) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13 110) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 111) chain a residue 118 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI4 112) chain a residue 198 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI4 113) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 114) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 115) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 116) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 117) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 118) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 119) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8

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