eF-site ID 5kai-D PDB Code 5kai Chain D click to enlarge Title NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A resolution Classification ELECTRON TRANSPORT Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTG TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLL LWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFE IARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP SFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLC AIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANR FWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLAL NLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAP QDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 602 source : AC2 2) chain D residue 268 type sequence H description binding site for residue FE2 A 602 source : AC2 3) chain D residue 317 type sequence K description binding site for residue CL A 604 source : AC4 4) chain D residue 205 type sequence L description binding site for residue CLA A 606 source : AC6 5) chain D residue 157 type sequence F description binding site for residue CLA A 607 source : AC7 6) chain D residue 175 type sequence V description binding site for residue CLA A 607 source : AC7 7) chain D residue 178 type sequence I description binding site for residue CLA A 607 source : AC7 8) chain D residue 179 type sequence F description binding site for residue CLA A 607 source : AC7 9) chain D residue 182 type sequence L description binding site for residue CLA A 607 source : AC7 10) chain D residue 208 type sequence A description binding site for residue PHO A 608 source : AC8 11) chain D residue 209 type sequence L description binding site for residue PHO A 608 source : AC8 12) chain D residue 213 type sequence I description binding site for residue PHO A 608 source : AC8 13) chain D residue 253 type sequence W description binding site for residue PHO A 608 source : AC8 14) chain D residue 257 type sequence F description binding site for residue PHO A 608 source : AC8 15) chain D residue 45 type sequence L description binding site for residue PL9 A 611 source : AD2 16) chain D residue 232 type sequence F description binding site for residue SQD A 612 source : AD3 17) chain D residue 233 type sequence R description binding site for residue SQD A 612 source : AD3 18) chain D residue 214 type sequence H description binding site for residue BCT A 615 source : AD5 19) chain D residue 244 type sequence Y description binding site for residue BCT A 615 source : AD5 20) chain D residue 264 type sequence K description binding site for residue BCT A 615 source : AD5 21) chain D residue 268 type sequence H description binding site for residue BCT A 615 source : AD5 22) chain D residue 120 type sequence F description binding site for residue CLA B 609 source : AE4 23) chain D residue 123 type sequence I description binding site for residue CLA B 609 source : AE4 24) chain D residue 126 type sequence M description binding site for residue CLA B 609 source : AE4 25) chain D residue 127 type sequence L description binding site for residue CLA B 609 source : AE4 26) chain D residue 32 type sequence W description binding site for residue SQD B 623 source : AF8 27) chain D residue 134 type sequence R description binding site for residue SQD B 623 source : AF8 28) chain D residue 141 type sequence Y description binding site for residue LHG B 625 source : AF9 29) chain D residue 269 type sequence F description binding site for residue LHG B 625 source : AF9 30) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AI5 31) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AI5 32) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI5 33) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AI5 34) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI5 35) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI5 36) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI5 37) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AI5 38) chain D residue 173 type sequence F description binding site for residue PHO D 401 source : AI5 39) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AI5 40) chain D residue 175 type sequence V description binding site for residue PHO D 401 source : AI5 41) chain D residue 279 type sequence L description binding site for residue PHO D 401 source : AI5 42) chain D residue 198 type sequence M description binding site for residue CLA D 402 source : AI6 43) chain D residue 201 type sequence V description binding site for residue CLA D 402 source : AI6 44) chain D residue 202 type sequence A description binding site for residue CLA D 402 source : AI6 45) chain D residue 206 type sequence G description binding site for residue CLA D 402 source : AI6 46) chain D residue 45 type sequence L description binding site for residue CLA D 403 source : AI7 47) chain D residue 149 type sequence P description binding site for residue CLA D 403 source : AI7 48) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AI7 49) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AI7 50) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AI7 51) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AI7 52) chain D residue 186 type sequence Q description binding site for residue CLA D 403 source : AI7 53) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AI7 54) chain D residue 192 type sequence T description binding site for residue CLA D 403 source : AI7 55) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AI7 56) chain D residue 200 type sequence G description binding site for residue CLA D 403 source : AI7 57) chain D residue 201 type sequence V description binding site for residue CLA D 403 source : AI7 58) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AI7 59) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AI7 60) chain D residue 35 type sequence I description binding site for residue CLA D 404 source : AI8 61) chain D residue 39 type sequence P description binding site for residue CLA D 404 source : AI8 62) chain D residue 43 type sequence L description binding site for residue CLA D 404 source : AI8 63) chain D residue 89 type sequence L description binding site for residue CLA D 404 source : AI8 64) chain D residue 90 type sequence L description binding site for residue CLA D 404 source : AI8 65) chain D residue 92 type sequence L description binding site for residue CLA D 404 source : AI8 66) chain D residue 93 type sequence W description binding site for residue CLA D 404 source : AI8 67) chain D residue 112 type sequence T description binding site for residue CLA D 404 source : AI8 68) chain D residue 113 type sequence F description binding site for residue CLA D 404 source : AI8 69) chain D residue 117 type sequence H description binding site for residue CLA D 404 source : AI8 70) chain D residue 42 type sequence Y description binding site for residue BCR D 405 source : AI9 71) chain D residue 46 type sequence G description binding site for residue BCR D 405 source : AI9 72) chain D residue 49 type sequence L description binding site for residue BCR D 405 source : AI9 73) chain D residue 50 type sequence T description binding site for residue BCR D 405 source : AI9 74) chain D residue 209 type sequence L description binding site for residue PL9 D 406 source : AJ1 75) chain D residue 214 type sequence H description binding site for residue PL9 D 406 source : AJ1 76) chain D residue 217 type sequence T description binding site for residue PL9 D 406 source : AJ1 77) chain D residue 253 type sequence W description binding site for residue PL9 D 406 source : AJ1 78) chain D residue 260 type sequence A description binding site for residue PL9 D 406 source : AJ1 79) chain D residue 261 type sequence F description binding site for residue PL9 D 406 source : AJ1 80) chain D residue 267 type sequence L description binding site for residue PL9 D 406 source : AJ1 81) chain D residue 256 type sequence I description binding site for residue LHG D 407 source : AJ2 82) chain D residue 257 type sequence F description binding site for residue LHG D 407 source : AJ2 83) chain D residue 259 type sequence I description binding site for residue LHG D 407 source : AJ2 84) chain D residue 260 type sequence A description binding site for residue LHG D 407 source : AJ2 85) chain D residue 261 type sequence F description binding site for residue LHG D 407 source : AJ2 86) chain D residue 262 type sequence S description binding site for residue LHG D 407 source : AJ2 87) chain D residue 263 type sequence N description binding site for residue LHG D 407 source : AJ2 88) chain D residue 266 type sequence W description binding site for residue LHG D 407 source : AJ2 89) chain D residue 219 type sequence E description binding site for residue LHG D 408 source : AJ3 90) chain D residue 220 type sequence N description binding site for residue LHG D 408 source : AJ3 91) chain D residue 229 type sequence A description binding site for residue LHG D 408 source : AJ3 92) chain D residue 230 type sequence S description binding site for residue LHG D 408 source : AJ3 93) chain D residue 231 type sequence T description binding site for residue LHG D 408 source : AJ3 94) chain D residue 232 type sequence F description binding site for residue LHG D 408 source : AJ3 95) chain D residue 67 type sequence Y description binding site for residue LMG D 409 source : AJ4 96) chain D residue 70 type sequence G description binding site for residue LMG D 409 source : AJ4 97) chain D residue 72 type sequence N description binding site for residue LMG D 409 source : AJ4 98) chain D residue 73 type sequence F description binding site for residue LMG D 409 source : AJ4 99) chain D residue 24 type sequence R description binding site for residue SQD D 410 source : AJ5 100) chain D residue 26 type sequence R description binding site for residue SQD D 410 source : AJ5 101) chain D residue 125 type sequence F description binding site for residue LHG E 101 source : AJ6 102) chain D residue 87 type sequence H description binding site for residue DGD H 103 source : AJ9 103) chain D residue 162 type sequence L description binding site for residue DGD H 103 source : AJ9 104) chain D residue 266 type sequence W description binding site for residue LHG L 101 source : AK3 105) chain D residue 273 type sequence F description binding site for residue LHG L 101 source : AK3 106) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244 107) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 108) chain D residue 266-288 type TRANSMEM sequence WLHFFMLFVPVTGLWMSAIGVVG description Helical => ECO:0000255|HAMAP-Rule:MF_00717 source Swiss-Prot : SWS_FT_FI2 109) chain D residue 289-352 type TOPO_DOM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Cytoplasmic => ECO:0000269|PubMed:19219048 source Swiss-Prot : SWS_FT_FI3 110) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 111) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 112) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 113) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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