eF-site ID 5kaf-c PDB Code 5kaf Chain c click to enlarge Title RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution Classification ELECTRON TRANSPORT Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence c:  ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVF WAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPG GEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEE YSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFF GGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEG WIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARR AFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFY GPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLM RSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKN DIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSP RSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRE SEPVLSMPSLD Description Functional site 1) chain c residue 354 type sequence E description binding site for residue OEX a 601 source : AL1 2) chain c residue 357 type sequence R description binding site for residue OEX a 601 source : AL1 3) chain c residue 36 type sequence W description binding site for residue LHG a 614 source : AM5 4) chain c residue 443 type sequence W description binding site for residue LHG a 614 source : AM5 5) chain c residue 447 type sequence R description binding site for residue LHG a 614 source : AM5 6) chain c residue 28 type sequence Q description binding site for residue SQD c 501 source : AP3 7) chain c residue 36 type sequence W description binding site for residue SQD c 501 source : AP3 8) chain c residue 213 type sequence L description binding site for residue LMG c 502 source : AP4 9) chain c residue 214 type sequence L description binding site for residue LMG c 502 source : AP4 10) chain c residue 215 type sequence K description binding site for residue LMG c 502 source : AP4 11) chain c residue 216 type sequence S description binding site for residue LMG c 502 source : AP4 12) chain c residue 218 type sequence F description binding site for residue LMG c 502 source : AP4 13) chain c residue 223 type sequence W description binding site for residue LMG c 502 source : AP4 14) chain c residue 284 type sequence F description binding site for residue LMG c 502 source : AP4 15) chain c residue 95 type sequence L description binding site for residue CLA c 503 source : AP5 16) chain c residue 171 type sequence G description binding site for residue CLA c 503 source : AP5 17) chain c residue 172 type sequence A description binding site for residue CLA c 503 source : AP5 18) chain c residue 175 type sequence L description binding site for residue CLA c 503 source : AP5 19) chain c residue 233 type sequence V description binding site for residue CLA c 503 source : AP5 20) chain c residue 237 type sequence H description binding site for residue CLA c 503 source : AP5 21) chain c residue 282 type sequence M description binding site for residue CLA c 503 source : AP5 22) chain c residue 289 type sequence F description binding site for residue CLA c 503 source : AP5 23) chain c residue 296 type sequence V description binding site for residue CLA c 503 source : AP5 24) chain c residue 297 type sequence Y description binding site for residue CLA c 503 source : AP5 25) chain c residue 63 type sequence W description binding site for residue CLA c 504 source : AP6 26) chain c residue 91 type sequence H description binding site for residue CLA c 504 source : AP6 27) chain c residue 174 type sequence L description binding site for residue CLA c 504 source : AP6 28) chain c residue 182 type sequence F description binding site for residue CLA c 504 source : AP6 29) chain c residue 279 type sequence L description binding site for residue CLA c 504 source : AP6 30) chain c residue 282 type sequence M description binding site for residue CLA c 504 source : AP6 31) chain c residue 286 type sequence A description binding site for residue CLA c 504 source : AP6 32) chain c residue 297 type sequence Y description binding site for residue CLA c 504 source : AP6 33) chain c residue 430 type sequence H description binding site for residue CLA c 504 source : AP6 34) chain c residue 433 type sequence L description binding site for residue CLA c 504 source : AP6 35) chain c residue 437 type sequence F description binding site for residue CLA c 504 source : AP6 36) chain c residue 60 type sequence I description binding site for residue CLA c 505 source : AP7 37) chain c residue 61 type sequence V description binding site for residue CLA c 505 source : AP7 38) chain c residue 68 type sequence T description binding site for residue CLA c 505 source : AP7 39) chain c residue 88 type sequence L description binding site for residue CLA c 505 source : AP7 40) chain c residue 91 type sequence H description binding site for residue CLA c 505 source : AP7 41) chain c residue 92 type sequence I description binding site for residue CLA c 505 source : AP7 42) chain c residue 114 type sequence V description binding site for residue CLA c 505 source : AP7 43) chain c residue 118 type sequence H description binding site for residue CLA c 505 source : AP7 44) chain c residue 63 type sequence W description binding site for residue CLA c 506 source : AP8 45) chain c residue 67 type sequence M description binding site for residue CLA c 506 source : AP8 46) chain c residue 70 type sequence F description binding site for residue CLA c 506 source : AP8 47) chain c residue 84 type sequence Q description binding site for residue CLA c 506 source : AP8 48) chain c residue 85 type sequence G description binding site for residue CLA c 506 source : AP8 49) chain c residue 87 type sequence I description binding site for residue CLA c 506 source : AP8 50) chain c residue 425 type sequence W description binding site for residue CLA c 506 source : AP8 51) chain c residue 429 type sequence S description binding site for residue CLA c 506 source : AP8 52) chain c residue 430 type sequence H description binding site for residue CLA c 506 source : AP8 53) chain c residue 436 type sequence F description binding site for residue CLA c 506 source : AP8 54) chain c residue 274 type sequence Y description binding site for residue CLA c 507 source : AP9 55) chain c residue 277 type sequence G description binding site for residue CLA c 507 source : AP9 56) chain c residue 441 type sequence H description binding site for residue CLA c 507 source : AP9 57) chain c residue 442 type sequence L description binding site for residue CLA c 507 source : AP9 58) chain c residue 445 type sequence A description binding site for residue CLA c 507 source : AP9 59) chain c residue 449 type sequence R description binding site for residue CLA c 507 source : AP9 60) chain c residue 165 type sequence L description binding site for residue CLA c 508 source : AQ1 61) chain c residue 243 type sequence I description binding site for residue CLA c 508 source : AQ1 62) chain c residue 247 type sequence G description binding site for residue CLA c 508 source : AQ1 63) chain c residue 250 type sequence W description binding site for residue CLA c 508 source : AQ1 64) chain c residue 251 type sequence H description binding site for residue CLA c 508 source : AQ1 65) chain c residue 255 type sequence T description binding site for residue CLA c 508 source : AQ1 66) chain c residue 257 type sequence F description binding site for residue CLA c 508 source : AQ1 67) chain c residue 259 type sequence W description binding site for residue CLA c 508 source : AQ1 68) chain c residue 264 type sequence F description binding site for residue CLA c 508 source : AQ1 69) chain c residue 157 type sequence M description binding site for residue CLA c 509 source : AQ2 70) chain c residue 161 type sequence L description binding site for residue CLA c 509 source : AQ2 71) chain c residue 164 type sequence H description binding site for residue CLA c 509 source : AQ2 72) chain c residue 168 type sequence L description binding site for residue CLA c 509 source : AQ2 73) chain c residue 259 type sequence W description binding site for residue CLA c 509 source : AQ2 74) chain c residue 264 type sequence F description binding site for residue CLA c 509 source : AQ2 75) chain c residue 266 type sequence W description binding site for residue CLA c 509 source : AQ2 76) chain c residue 271 type sequence Y description binding site for residue CLA c 509 source : AQ2 77) chain c residue 274 type sequence Y description binding site for residue CLA c 509 source : AQ2 78) chain c residue 275 type sequence S description binding site for residue CLA c 509 source : AQ2 79) chain c residue 278 type sequence A description binding site for residue CLA c 509 source : AQ2 80) chain c residue 279 type sequence L description binding site for residue CLA c 509 source : AQ2 81) chain c residue 282 type sequence M description binding site for residue CLA c 509 source : AQ2 82) chain c residue 33 type sequence F description binding site for residue CLA c 510 source : AQ3 83) chain c residue 36 type sequence W description binding site for residue CLA c 510 source : AQ3 84) chain c residue 37 type sequence A description binding site for residue CLA c 510 source : AQ3 85) chain c residue 38 type sequence G description binding site for residue CLA c 510 source : AQ3 86) chain c residue 39 type sequence N description binding site for residue CLA c 510 source : AQ3 87) chain c residue 272 type sequence L description binding site for residue CLA c 510 source : AQ3 88) chain c residue 276 type sequence L description binding site for residue CLA c 510 source : AQ3 89) chain c residue 436 type sequence F description binding site for residue CLA c 510 source : AQ3 90) chain c residue 437 type sequence F description binding site for residue CLA c 510 source : AQ3 91) chain c residue 440 type sequence G description binding site for residue CLA c 510 source : AQ3 92) chain c residue 443 type sequence W description binding site for residue CLA c 510 source : AQ3 93) chain c residue 444 type sequence H description binding site for residue CLA c 510 source : AQ3 94) chain c residue 39 type sequence N description binding site for residue CLA c 511 source : AQ4 95) chain c residue 49 type sequence L description binding site for residue CLA c 511 source : AQ4 96) chain c residue 52 type sequence A description binding site for residue CLA c 511 source : AQ4 97) chain c residue 53 type sequence H description binding site for residue CLA c 511 source : AQ4 98) chain c residue 56 type sequence H description binding site for residue CLA c 511 source : AQ4 99) chain c residue 268 type sequence G description binding site for residue CLA c 511 source : AQ4 100) chain c residue 272 type sequence L description binding site for residue CLA c 511 source : AQ4 101) chain c residue 275 type sequence S description binding site for residue CLA c 511 source : AQ4 102) chain c residue 279 type sequence L description binding site for residue CLA c 511 source : AQ4 103) chain c residue 39 type sequence N description binding site for residue CLA c 512 source : AQ5 104) chain c residue 56 type sequence H description binding site for residue CLA c 512 source : AQ5 105) chain c residue 59 type sequence L description binding site for residue CLA c 512 source : AQ5 106) chain c residue 437 type sequence F description binding site for residue CLA c 512 source : AQ5 107) chain c residue 25 type sequence N description binding site for residue CLA c 513 source : AQ6 108) chain c residue 26 type sequence R description binding site for residue CLA c 513 source : AQ6 109) chain c residue 38 type sequence G description binding site for residue CLA c 513 source : AQ6 110) chain c residue 39 type sequence N description binding site for residue CLA c 513 source : AQ6 111) chain c residue 41 type sequence R description binding site for residue CLA c 513 source : AQ6 112) chain c residue 42 type sequence L description binding site for residue CLA c 513 source : AQ6 113) chain c residue 45 type sequence L description binding site for residue CLA c 513 source : AQ6 114) chain c residue 48 type sequence K description binding site for residue CLA c 513 source : AQ6 115) chain c residue 134 type sequence I description binding site for residue CLA c 513 source : AQ6 116) chain c residue 53 type sequence H description binding site for residue CLA c 514 source : AQ7 117) chain c residue 147 type sequence F description binding site for residue CLA c 514 source : AQ7 118) chain c residue 163 type sequence F description binding site for residue CLA c 514 source : AQ7 119) chain c residue 164 type sequence H description binding site for residue CLA c 514 source : AQ7 120) chain c residue 166 type sequence I description binding site for residue CLA c 514 source : AQ7 121) chain c residue 167 type sequence V description binding site for residue CLA c 514 source : AQ7 122) chain c residue 50 type sequence L description binding site for residue CLA c 515 source : AQ8 123) chain c residue 54 type sequence V description binding site for residue CLA c 515 source : AQ8 124) chain c residue 124 type sequence V description binding site for residue CLA c 515 source : AQ8 125) chain c residue 128 type sequence G description binding site for residue CLA c 515 source : AQ8 126) chain c residue 131 type sequence Y description binding site for residue CLA c 515 source : AQ8 127) chain c residue 132 type sequence H description binding site for residue CLA c 515 source : AQ8 128) chain c residue 137 type sequence P description binding site for residue CLA c 515 source : AQ8 129) chain c residue 140 type sequence L description binding site for residue CLA c 515 source : AQ8 130) chain c residue 143 type sequence Y description binding site for residue CLA c 515 source : AQ8 131) chain c residue 147 type sequence F description binding site for residue CLA c 515 source : AQ8 132) chain c residue 116 type sequence V description binding site for residue BCR c 516 source : AQ9 133) chain c residue 121 type sequence S description binding site for residue BCR c 516 source : AQ9 134) chain c residue 209 type sequence I description binding site for residue BCR c 517 source : AR1 135) chain c residue 213 type sequence L description binding site for residue BCR c 517 source : AR1 136) chain c residue 232 type sequence D description binding site for residue BCR c 517 source : AR1 137) chain c residue 236 type sequence G description binding site for residue BCR c 517 source : AR1 138) chain c residue 237 type sequence H description binding site for residue BCR c 517 source : AR1 139) chain c residue 240 type sequence I description binding site for residue BCR c 517 source : AR1 140) chain c residue 264 type sequence F description binding site for residue BCR c 517 source : AR1 141) chain c residue 217 type sequence P description binding site for residue DGD c 518 source : AR2 142) chain c residue 219 type sequence G description binding site for residue DGD c 518 source : AR2 143) chain c residue 220 type sequence G description binding site for residue DGD c 518 source : AR2 144) chain c residue 221 type sequence E description binding site for residue DGD c 518 source : AR2 145) chain c residue 222 type sequence G description binding site for residue DGD c 518 source : AR2 146) chain c residue 225 type sequence V description binding site for residue DGD c 518 source : AR2 147) chain c residue 227 type sequence V description binding site for residue DGD c 518 source : AR2 148) chain c residue 288 type sequence C description binding site for residue DGD c 518 source : AR2 149) chain c residue 293 type sequence N description binding site for residue DGD c 518 source : AR2 150) chain c residue 294 type sequence N description binding site for residue DGD c 518 source : AR2 151) chain c residue 295 type sequence T description binding site for residue DGD c 518 source : AR2 152) chain c residue 360 type sequence D description binding site for residue DGD c 518 source : AR2 153) chain c residue 361 type sequence F description binding site for residue DGD c 518 source : AR2 154) chain c residue 362 type sequence R description binding site for residue DGD c 518 source : AR2 155) chain c residue 83 type sequence E description binding site for residue DGD c 519 source : AR3 156) chain c residue 84 type sequence Q description binding site for residue DGD c 519 source : AR3 157) chain c residue 85 type sequence G description binding site for residue DGD c 519 source : AR3 158) chain c residue 406 type sequence S description binding site for residue DGD c 519 source : AR3 159) chain c residue 418 type sequence N description binding site for residue DGD c 519 source : AR3 160) chain c residue 419 type sequence F description binding site for residue DGD c 519 source : AR3 161) chain c residue 420 type sequence V description binding site for residue DGD c 519 source : AR3 162) chain c residue 425 type sequence W description binding site for residue DGD c 519 source : AR3 163) chain c residue 428 type sequence T description binding site for residue DGD c 519 source : AR3 164) chain c residue 405 type sequence N description binding site for residue DGD c 520 source : AR4 165) chain c residue 406 type sequence S description binding site for residue DGD c 520 source : AR4 166) chain c residue 407 type sequence V description binding site for residue DGD c 520 source : AR4 167) chain c residue 415 type sequence N description binding site for residue DGD c 520 source : AR4 168) chain c residue 416 type sequence S description binding site for residue DGD c 520 source : AR4 169) chain c residue 418 type sequence N description binding site for residue DGD c 520 source : AR4 170) chain c residue 74 type sequence H description binding site for residue LMG c 521 source : AR5 171) chain c residue 204 type sequence L description binding site for residue LMG c 522 source : AR6 172) chain c residue 206 type sequence P description binding site for residue LMG c 522 source : AR6 173) chain c residue 123 type sequence A description binding site for residue BCR k 101 source : AT1 174) chain c residue 62 type sequence F description binding site for residue BCR y 101 source : AT3 175) chain c residue 266-280 type TRANSMEM sequence WSGEAYLSYSLGALS description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 176) chain c residue 462-473 type TRANSMEM sequence ESEPVLSMPSLD description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 177) chain c residue 281-301 type TOPO_DOM sequence MMGFIATCFVWFNNTVYPSEF description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 178) chain c residue 437-461 type TOPO_DOM sequence FLVGHLWHAGRARAAAAGFEKGIDR description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2

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