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eF-site ID
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5jvh-A |
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PDB Code
|
5jvh |
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Chain
|
A |
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click to enlarge
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Title
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The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin |
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Classification
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RIBOSOME |
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Compound
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23S ribosomal RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans R1; |
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Sequence
|
A: |
RQMTTADFSGLTKKRPEKALTEALPKTGGRNNRGRITSRF
IGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIA
LLHYADGEKRYILAPEGLTVGATVNAGPEAEPKLGNALPL
RFVPVGAVVHALELVPGKGAQLARSAGTSVQVQGKESDYV
IVRLPSGELRRVHSECYATIGAVGNAEHKNIVLGKAGRSR
WLGRKPHQRGSAMNPVDHPHGGGEGRTGAGRVPVTPWGKP
TKGLKTRRKRKTSDRFIVT
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Description
|
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Functional site
|
|
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1)
|
chain |
A |
| residue |
225 |
| type |
|
| sequence |
A
|
| description |
binding site for residue MG X 2969
|
| source |
: AI7
|
|
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2)
|
chain |
A |
| residue |
227 |
| type |
|
| sequence |
N
|
| description |
binding site for residue MG X 2969
|
| source |
: AI7
|
|
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3)
|
chain |
A |
| residue |
233 |
| type |
|
| sequence |
H
|
| description |
binding site for residue MG X 3017
|
| source |
: AN5
|
|
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4)
|
chain |
A |
| residue |
234 |
| type |
|
| sequence |
G
|
| description |
binding site for residue MG X 3017
|
| source |
: AN5
|
|
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5)
|
chain |
A |
| residue |
219-230 |
| type |
prosite |
| sequence |
PHQRGSAMNPVD
|
| description |
RIBOSOMAL_L2 Ribosomal protein L2 signature. PhqRGSAmNPvD
|
| source |
prosite : PS00467
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