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|
eF-site ID
|
5jvg-N |
|
PDB Code
|
5jvg |
|
Chain
|
N |
|
click to enlarge
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Title
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The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin |
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Classification
|
RIBOSOME |
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Compound
|
23S ribosomal RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans R1; |
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Sequence
|
N: |
PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLN
AATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFIN
GLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ
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Description
|
|
Functional site
|
|
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1)
|
chain |
N |
| residue |
33 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG X 2964
|
| source |
: AI5
|
|
|
2)
|
chain |
N |
| residue |
58 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG X 3327
|
| source |
: BR9
|
|
|
3)
|
chain |
N |
| residue |
45 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue MG N 201
|
| source |
: BU6
|
|
|
4)
|
chain |
N |
| residue |
49 |
| type |
|
| sequence |
D
|
| description |
binding site for residue MG N 201
|
| source |
: BU6
|
|
|
5)
|
chain |
N |
| residue |
54-70 |
| type |
prosite |
| sequence |
KRDFRRLWIQRINAGAR
|
| description |
RIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRrLWIQRINagaR
|
| source |
prosite : PS00937
|
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