|
|
eF-site ID
|
5jvg-M |
|
PDB Code
|
5jvg |
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Chain
|
M |
|
click to enlarge
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Title
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The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin |
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Classification
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RIBOSOME |
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Compound
|
23S ribosomal RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans R1; |
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Sequence
|
M: |
QTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVRE
GNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF
PFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSD
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Description
|
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Functional site
|
|
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1)
|
chain |
M |
| residue |
99 |
| type |
|
| sequence |
V
|
| description |
binding site for residue MG X 3326
|
| source |
: BR8
|
|
|
2)
|
chain |
M |
| residue |
100 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG X 3326
|
| source |
: BR8
|
|
|
3)
|
chain |
M |
| residue |
101 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG X 3326
|
| source |
: BR8
|
|
|
4)
|
chain |
M |
| residue |
106 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue MG X 3326
|
| source |
: BR8
|
|
|
5)
|
chain |
M |
| residue |
58 |
| type |
|
| sequence |
N
|
| description |
binding site for residue MG M 201
|
| source |
: BU5
|
|
|
6)
|
chain |
M |
| residue |
93-108 |
| type |
prosite |
| sequence |
IVERGKVRRAKLYYLR
|
| description |
RIBOSOMAL_L19 Ribosomal protein L19 signature. IvErGKVR.RAKLYYLR
|
| source |
prosite : PS01015
|
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