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eF-site ID
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5jvg-B |
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PDB Code
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5jvg |
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Chain
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B |
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click to enlarge
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Title
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The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin |
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Classification
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RIBOSOME |
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Compound
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23S ribosomal RNA |
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Source
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ORGANISM_SCIENTIFIC: Deinococcus radiodurans R1; |
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Sequence
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B: |
MKGILGTKIGMTQIWKNDRAIPVTVVLAGPCPIVQRKTAQ
TDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILRE
FRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRW
NFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHM
GMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRS
AAKAS
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Description
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Functional site
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1)
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chain |
B |
| residue |
79 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG X 3230
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| source |
: BI9
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2)
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chain |
B |
| residue |
130 |
| type |
|
| sequence |
G
|
| description |
binding site for residue MG X 3295
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| source |
: BO9
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3)
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chain |
B |
| residue |
96-119 |
| type |
prosite |
| sequence |
FAEGEKIDATGTSKGKGTQGVMKR
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| description |
RIBOSOMAL_L3 Ribosomal protein L3 signature. FaegekiDatGtSkGKGtqGvmkR
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| source |
prosite : PS00474
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