eF-site ID 5irx-D
PDB Code 5irx
Chain D

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Title Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc
Classification TRANSPORT PROTEIN
Compound Transient receptor potential cation channel subfamily V member 1
Source (DKTX_HAPSC)
Sequence D:  TPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAY
GPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLL
VEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYY
RPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQ
YFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQR
KEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMIL
RDLCRFMFVYLVFLFGFSTAVVTLIEDGKYNSLYSTCLEL
FKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNM
LIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMR
KAFRSGKLLQVGFTPDGKDDYRWCFRVDEVNWTT
Description (1)  Transient receptor potential cation channel subfamily V member 1, Tau-theraphotoxin-Hs1a


Functional site

1) chain D
residue 591
type
sequence F
description binding site for residue 6EU B 803
source : AC7

2) chain D
residue 668
type
sequence I
description binding site for residue 6EU B 803
source : AC7

3) chain D
residue 669
type
sequence L
description binding site for residue 6EU B 803
source : AC7

4) chain D
residue 437
type
sequence N
description binding site for residue 6O8 D 801
source : AD2

5) chain D
residue 440
type
sequence V
description binding site for residue 6O8 D 801
source : AD2

6) chain D
residue 487
type
sequence Y
description binding site for residue 6O8 D 801
source : AD2

7) chain D
residue 488
type
sequence F
description binding site for residue 6O8 D 801
source : AD2

8) chain D
residue 491
type
sequence R
description binding site for residue 6O8 D 801
source : AD2

9) chain D
residue 513
type
sequence E
description binding site for residue 6O8 D 801
source : AD2

10) chain D
residue 516
type
sequence F
description binding site for residue 6O8 D 801
source : AD2

11) chain D
residue 554
type
sequence Y
description binding site for residue 6O8 D 801
source : AD2

12) chain D
residue 555
type
sequence Y
description binding site for residue 6O8 D 801
source : AD2

13) chain D
residue 534
type
sequence R
description binding site for residue 6O9 D 802
source : AD3

14) chain D
residue 629
type
sequence S
description binding site for residue 6OE D 803
source : AD4

15) chain D
residue 631
type
sequence Y
description binding site for residue 6OE D 803
source : AD4

16) chain D
residue 532
type
sequence S
description binding site for residue 6OE D 804
source : AD5

17) chain D
residue 534
type
sequence R
description binding site for residue 6OE D 804
source : AD5

18) chain D
residue 511
type
sequence Y
description binding site for residue 6EU D 805
source : AD6

19) chain D
residue 512
type
sequence S
description binding site for residue 6EU D 805
source : AD6

20) chain D
residue 514
type
sequence I
description binding site for residue 6EU D 805
source : AD6

21) chain D
residue 515
type
sequence L
description binding site for residue 6EU D 805
source : AD6

22) chain D
residue 546
type
sequence A
description binding site for residue 6EU D 805
source : AD6

23) chain D
residue 547
type
sequence M
description binding site for residue 6EU D 805
source : AD6

24) chain D
residue 550
type
sequence T
description binding site for residue 6EU D 805
source : AD6

25) chain D
residue 551
type
sequence N
description binding site for residue 6EU D 805
source : AD6

26) chain D
residue 553
type
sequence L
description binding site for residue 6EU D 805
source : AD6

27) chain D
residue 554
type
sequence Y
description binding site for residue 6EU D 805
source : AD6

28) chain D
residue 557
type
sequence R
description binding site for residue 6EU D 805
source : AD6

29) chain D
residue 566
type
sequence A
description binding site for residue 6EU D 805
source : AD6

30) chain D
residue 569
type
sequence I
description binding site for residue 6EU D 805
source : AD6

31) chain D
residue 573
type
sequence I
description binding site for residue 6EU D 805
source : AD6

32) chain D
residue 453
type
sequence Y
description binding site for residue 6OE E 102
source : AD8

33) chain D
residue 650-672
type INTRAMEM
sequence TENYDFKAVFIILLLAYVILTYI
description Pore-forming => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200, ECO:0000305|PubMed:10931826
source Swiss-Prot : SWS_FT_FI4

34) chain D
residue 370
type MOD_RES
sequence T
description Phosphothreonine; by PKA; in vitro => ECO:0000269|PubMed:12194871
source Swiss-Prot : SWS_FT_FI10

35) chain D
residue 502
type MOD_RES
sequence S
description Phosphoserine; by PKC/PRKCE => ECO:0000269|PubMed:11884385, ECO:0000269|PubMed:12194871, ECO:0000269|PubMed:14630912
source Swiss-Prot : SWS_FT_FI11

36) chain D
residue 727
type MOD_RES
sequence Q
description Phosphothreonine => ECO:0000269|PubMed:14630912
source Swiss-Prot : SWS_FT_FI12

37) chain D
residue 627
type CARBOHYD
sequence Y
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:11683872
source Swiss-Prot : SWS_FT_FI13

38) chain D
residue 511
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:27281200, ECO:0007744|PDB:5IRX
source Swiss-Prot : SWS_FT_FI7

39) chain D
residue 550
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:27281200, ECO:0007744|PDB:5IRX
source Swiss-Prot : SWS_FT_FI7

40) chain D
residue 557
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27281200, ECO:0007744|PDB:5IRX
source Swiss-Prot : SWS_FT_FI7

41) chain D
residue 669
type BINDING
sequence L
description BINDING => ECO:0000250|UniProtKB:Q9R186
source Swiss-Prot : SWS_FT_FI8

42) chain D
residue 433-453
type TRANSMEM
sequence IFYFNFFVYCLYMIIFTAAAY
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

43) chain D
residue 472-497
type TRANSMEM
sequence YFRVTGEILSVSGGVYFFFRGIQYFL
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

44) chain D
residue 511-531
type TRANSMEM
sequence YSEILFFVQSLFMLVSVVLYF
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

45) chain D
residue 536-556
type TRANSMEM
sequence EYVASMVFSLAMGWTNMLYYT
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

46) chain D
residue 572-599
type TRANSMEM
sequence MILRDLCRFMFVYLVFLFGFSTAVVTLI
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

47) chain D
residue 681-709
type TRANSMEM
sequence LMGETVNKIAQESKNIWKLQRAITILDTE
description Helical => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI1

48) chain D
residue 498-510
type TOPO_DOM
sequence QRRPSLKSLFVDS
description Cytoplasmic => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI3

49) chain D
residue 557-571
type TOPO_DOM
sequence RGFQQMGIYAVMIEK
description Cytoplasmic => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI3

50) chain D
residue 454-471
type TOPO_DOM
sequence YRPVEGLPPYKLKNTVGD
description Extracellular => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI2

51) chain D
residue 532-535
type TOPO_DOM
sequence SQRK
description Extracellular => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI2

52) chain D
residue 600-649
type TOPO_DOM
sequence EDGKYNSLYSTCLELFKFTIGMGDLEF
description Extracellular => ECO:0000269|PubMed:24305160, ECO:0000269|PubMed:27281200
source Swiss-Prot : SWS_FT_FI2


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