|
eF-site ID
|
5ipn-F |
PDB Code
|
5ipn |
Chain
|
F |
|
click to enlarge
|
|
Title
|
SigmaS-transcription initiation complex with 4-nt nascent RNA |
Classification
|
TRANSCRIPTION, TRANSFERASE/DNA/RNA |
Compound
|
DNA-directed RNA polymerase subunit alpha |
Source
|
Escherichia coli (strain K12) (5IPN) |
|
Sequence
|
F: |
RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR
RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE
KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV
KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM
LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD
DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG
REIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFL
|
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Description
|
(1) |
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega, RNA polymerase sigma factor RpoS/DNA Complex
|
|
Functional site
|
|
1)
|
chain |
F |
residue |
118-131 |
type |
prosite |
sequence |
DLIEEGNLGLIRAV
|
description |
SIGMA70_1 Sigma-70 factors family signature 1. DLIEeGnLGLIrAV
|
source |
prosite : PS00715
|
|
2)
|
chain |
F |
residue |
287-313 |
type |
prosite |
sequence |
TLEDVGREIGLTRERVRQIQVEGLRRL
|
description |
SIGMA70_2 Sigma-70 factors family signature 2. TleDVGreigLTrerVrQIQvegLrrL
|
source |
prosite : PS00716
|
|
3)
|
chain |
F |
residue |
288-307 |
type |
DNA_BIND |
sequence |
LEDVGREIGLTRERVRQIQV
|
description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959
|
source |
Swiss-Prot : SWS_FT_FI1
|
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