eF-site ID 5ipn-D PDB Code 5ipn Chain D click to enlarge Title SigmaS-transcription initiation complex with 4-nt nascent RNA Classification TRANSCRIPTION, TRANSFERASE/DNA/RNA Compound DNA-directed RNA polymerase subunit alpha Source Escherichia coli (strain K12) (5IPN) Sequence D:  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERD GLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQ TKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDE VIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAE RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGV CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA NGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA AG Description (1)  DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega, RNA polymerase sigma factor RpoS/DNA Complex Functional site 1) chain D residue 70 type sequence C description binding site for residue ZN D 1501 source : AC1 2) chain D residue 72 type sequence C description binding site for residue ZN D 1501 source : AC1 3) chain D residue 85 type sequence C description binding site for residue ZN D 1501 source : AC1 4) chain D residue 88 type sequence C description binding site for residue ZN D 1501 source : AC1 5) chain D residue 814 type sequence C description binding site for residue ZN D 1502 source : AC2 6) chain D residue 888 type sequence C description binding site for residue ZN D 1502 source : AC2 7) chain D residue 895 type sequence C description binding site for residue ZN D 1502 source : AC2 8) chain D residue 898 type sequence C description binding site for residue ZN D 1502 source : AC2 9) chain D residue 460 type sequence D description binding site for residue MG D 1503 source : AC3 10) chain D residue 462 type sequence D description binding site for residue MG D 1503 source : AC3 11) chain D residue 464 type sequence D description binding site for residue MG D 1503 source : AC3 12) chain D residue 895 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 13) chain D residue 898 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 14) chain D residue 72 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 15) chain D residue 85 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 16) chain D residue 88 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 17) chain D residue 460 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 462 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 464 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 20) chain D residue 814 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 21) chain D residue 888 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959 source Swiss-Prot : SWS_FT_FI1 22) chain D residue 983 type MOD_RES sequence K description N6-acetyllysine => ECO:0000255|HAMAP-Rule:MF_01322, ECO:0000269|PubMed:18723842 source Swiss-Prot : SWS_FT_FI2

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