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eF-site ID
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5ipm-F |
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PDB Code
|
5ipm |
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Chain
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F |
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click to enlarge
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Title
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SigmaS-transcription initiation complex with 4-nt nascent RNA |
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Classification
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TRANSCRIPTION, TRANSFERASE/DNA/RNA |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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Escherichia coli (strain K12) (5IPM) |
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Sequence
|
F: |
RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR
RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE
KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV
KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM
LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD
DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG
REIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFL
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Description
|
(1) |
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega, RNA polymerase sigma factor RpoS/DNA Complex
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Functional site
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|
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1)
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chain |
F |
| residue |
288-307 |
| type |
DNA_BIND |
| sequence |
LEDVGREIGLTRERVRQIQV
|
| description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00959
|
| source |
Swiss-Prot : SWS_FT_FI1
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2)
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chain |
F |
| residue |
118-131 |
| type |
prosite |
| sequence |
DLIEEGNLGLIRAV
|
| description |
SIGMA70_1 Sigma-70 factors family signature 1. DLIEeGnLGLIrAV
|
| source |
prosite : PS00715
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3)
|
chain |
F |
| residue |
287-313 |
| type |
prosite |
| sequence |
TLEDVGREIGLTRERVRQIQVEGLRRL
|
| description |
SIGMA70_2 Sigma-70 factors family signature 2. TleDVGreigLTrerVrQIQvegLrrL
|
| source |
prosite : PS00716
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