eF-site ID 5ieh-B
PDB Code 5ieh
Chain B

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Title Structure of HLA-B*40:02 in complex with the phosphorylated endogenous peptide REF(p)SKEPEL
Classification IMMUNE SYSTEM
Compound HLA class I histocompatibility antigen, B-40 alpha chain
Source (E9PM67_HUMAN)
Sequence B:  QRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLK
NGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR
VNHVTLSQPKIVKWDRDM
Description (1)  HLA class I histocompatibility antigen, B-40 alpha chain, Beta-2-microglobulin, Inner centromere protein


Functional site

1) chain B
residue 10
type
sequence Y
description binding site for residue EDO B 101
source : AC1

2) chain B
residue 11
type
sequence S
description binding site for residue EDO B 101
source : AC1

3) chain B
residue 13
type
sequence H
description binding site for residue EDO B 101
source : AC1

4) chain B
residue 14
type
sequence P
description binding site for residue EDO B 101
source : AC1

5) chain B
residue 78-84
type prosite
sequence YACRVNH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCHVQH
source prosite : PS00290

6) chain B
residue 2
type MOD_RES
sequence Q
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

7) chain B
residue 19
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

8) chain B
residue 41
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

9) chain B
residue 48
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

10) chain B
residue 58
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

11) chain B
residue 91
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

12) chain B
residue 94
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3


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