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eF-site ID
|
5h4p-B |
PDB Code
|
5h4p |
Chain
|
B |
|
click to enlarge
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Title
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Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 |
Classification
|
RIBOSOME |
Compound
|
25S ribosomal RNA |
Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
|
B: |
SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPV
ALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDT
PPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKN
WYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVL
VHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEK
TVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRK
THRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHK
IYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDF
IMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDT
ASKFGKGRFQTPAEKHAFMGTLKKDL
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Description
|
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Functional site
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1)
|
chain |
B |
residue |
209-232 |
type |
prosite |
sequence |
FEQNEMIDAIAVTKGHGFEGVTHR
|
description |
RIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR
|
source |
prosite : PS00474
|
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2)
|
chain |
B |
residue |
297 |
type |
MOD_RES |
sequence |
S
|
description |
Phosphoserine => ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI4
|
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3)
|
chain |
B |
residue |
39 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
|
source |
Swiss-Prot : SWS_FT_FI5
|
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4)
|
chain |
B |
residue |
136 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
|
source |
Swiss-Prot : SWS_FT_FI5
|
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