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eF-site ID
|
5h4p-A |
PDB Code
|
5h4p |
Chain
|
A |
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click to enlarge
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Title
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Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 |
Classification
|
RIBOSOME |
Compound
|
25S ribosomal RNA |
Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
|
Sequence
|
A: |
GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYI
RGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEG
VHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPG
DRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSD
ARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRG
VAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAAR
RTGLLR
|
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Description
|
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Functional site
|
|
1)
|
chain |
A |
residue |
197-208 |
type |
prosite |
sequence |
PKTRGVAMNPVD
|
description |
RIBOSOMAL_L2 Ribosomal protein L2 signature. PktRGVAmNPvD
|
source |
prosite : PS00467
|
|
2)
|
chain |
A |
residue |
93 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P05739
|
source |
Swiss-Prot : SWS_FT_FI3
|
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3)
|
chain |
A |
residue |
119 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P05739
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
4)
|
chain |
A |
residue |
145 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P05739
|
source |
Swiss-Prot : SWS_FT_FI3
|
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