eF-site ID 5gtd-AB
PDB Code 5gtd
Chain A, B

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Title o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis in Complex with the Acyl-adenylate Intermediate OSB-AMP
Classification LIGASE
Compound 2-succinylbenzoate--CoA ligase
Source Bacillus subtilis (strain 168) (MENE_BACSU)
Sequence A:  LTEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRM
AEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAV
LLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQT
IDVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKG
VQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLS
ALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQT
MLASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFP
VFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKI
ERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNG
WLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVES
VLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLHKPVSAGEL
TDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDAR
KGEL
B:  TEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMA
EQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVL
LNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTI
DVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGV
QQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSA
LFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTM
LASLLEETNRCPESIRCILLGGGPPLPLLEECREKGFPVF
QSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIER
DGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGWL
KTGDLGYLDNEGFLYVLDRR
Description


Functional site

1) chain A
residue 19
type
sequence R
description binding site for residue CL A 501
source : AC1

2) chain B
residue 178
type
sequence L
description binding site for residue CL A 501
source : AC1

3) chain A
residue 297
type
sequence T
description binding site for residue PEG A 504
source : AC2

4) chain A
residue 299
type
sequence S
description binding site for residue PEG A 504
source : AC2

5) chain A
residue 301
type
sequence E
description binding site for residue PEG A 504
source : AC2

6) chain B
residue 172
type
sequence S
description binding site for residue CL B 501
source : AC3

7) chain B
residue 291
type
sequence T
description binding site for residue CL B 501
source : AC3

8) chain B
residue 292
type
sequence C
description binding site for residue CL B 501
source : AC3

9) chain B
residue 293
type
sequence S
description binding site for residue CL B 501
source : AC3

10) chain B
residue 294
type
sequence Q
description binding site for residue CL B 501
source : AC3

11) chain B
residue 342
type
sequence N
description binding site for residue CL B 501
source : AC3

12) chain A
residue 315
type
sequence F
description binding site for residue MG B 502
source : AC4

13) chain A
residue 316
type
sequence S
description binding site for residue MG B 502
source : AC4

14) chain B
residue 6
type
sequence P
description binding site for residue MG B 502
source : AC4

15) chain B
residue 8
type
sequence W
description binding site for residue MG B 502
source : AC4

16) chain B
residue 11
type
sequence Q
description binding site for residue MG B 502
source : AC4

17) chain A
residue 178
type
sequence L
description binding site for residue IMD B 503
source : AC5

18) chain A
residue 179
type
sequence N
description binding site for residue IMD B 503
source : AC5

19) chain B
residue 19
type
sequence R
description binding site for residue IMD B 503
source : AC5

20) chain B
residue 184
type
sequence E
description binding site for residue IMD B 503
source : AC5

21) chain B
residue 209
type
sequence Y
description binding site for residue IMD B 503
source : AC5

22) chain A
residue 153
type
sequence S
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

23) chain A
residue 196
type
sequence H
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

24) chain A
residue 197
type
sequence I
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

25) chain A
residue 198
type
sequence S
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

26) chain A
residue 238
type
sequence A
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

27) chain A
residue 261
type
sequence L
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

28) chain A
residue 263
type
sequence G
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

29) chain A
residue 264
type
sequence G
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

30) chain A
residue 265
type
sequence G
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

31) chain A
residue 266
type
sequence P
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

32) chain A
residue 285
type
sequence S
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

33) chain A
residue 287
type
sequence G
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

34) chain A
residue 288
type
sequence M
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

35) chain A
residue 289
type
sequence T
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

36) chain A
residue 293
type
sequence S
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

37) chain A
residue 294
type
sequence Q
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

38) chain A
residue 367
type
sequence D
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

39) chain A
residue 379
type
sequence V
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

40) chain A
residue 382
type
sequence R
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

41) chain A
residue 471
type
sequence K
description binding site for Di-nucleotide A A 505 and OSB A 506
source : AC6

42) chain B
residue 197
type
sequence I
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

43) chain B
residue 198
type
sequence S
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

44) chain B
residue 238
type
sequence A
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

45) chain B
residue 261
type
sequence L
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

46) chain B
residue 263
type
sequence G
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

47) chain B
residue 264
type
sequence G
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

48) chain B
residue 266
type
sequence P
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

49) chain B
residue 285
type
sequence S
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

50) chain B
residue 287
type
sequence G
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

51) chain B
residue 288
type
sequence M
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

52) chain B
residue 289
type
sequence T
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

53) chain B
residue 293
type
sequence S
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

54) chain B
residue 294
type
sequence Q
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

55) chain B
residue 367
type
sequence D
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

56) chain B
residue 379
type
sequence V
description binding site for Di-nucleotide A B 504 and OSB B 505
source : AC7

57) chain A
residue 149-160
type prosite
sequence LMYTSGTTGKPK
description AMP_BINDING Putative AMP-binding domain signature. LMYTSGTTGkPK
source prosite : PS00455


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