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eF-site ID
|
5gnb-A |
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PDB Code
|
5gnb |
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Chain
|
A |
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click to enlarge
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Title
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Crystal Structure of the Receptor Binding Domain of the Spike Glycoprotein of Human Betacoronavirus HKU1 (HKU1 1A-CTD, 2.3 angstrom, native-SAD phasing) |
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Classification
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VIRAL PROTEIN |
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Compound
|
Spike glycoprotein |
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Source
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Human coronavirus HKU1 (isolate N1) (HCoV-HKU1) (SPIKE_CVHN1) |
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Sequence
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A: |
VKPVATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFS
NCNFNLSTLLRLVHTDSFSCNNFDESKIYGSCFKSIVLDK
FAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSLP
AINVTINNYNPSSWNRRYGFNNFNLSSHSVVYSRYCFSVN
NTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVL
DHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFG
VDEEKCGVLDGSYNVSCLCSTDAFLGWSYDTCVSNNRCNI
FSNFILNGINSGTTCSNDLLQPNTEVFTDVCVDYDLYGIT
GQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYN
IFPC
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Description
|
(1) |
Spike glycoprotein
|
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Functional site
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|
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1)
|
chain |
A |
| residue |
355 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
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| source |
Swiss-Prot : SWS_FT_FI1
|
|
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2)
|
chain |
A |
| residue |
433 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
3)
|
chain |
A |
| residue |
454 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
4)
|
chain |
A |
| residue |
470 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
5)
|
chain |
A |
| residue |
564 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
6)
|
chain |
A |
| residue |
666 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|