eF-site ID 5fxi-D
PDB Code 5fxi
Chain D

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Title GluN1b-GluN2B NMDA receptor structure in non-active-2 conformation
Classification TRANSPORT PROTEIN
Compound N-METHYL-D-ASPARTATE RECEPTOR GLUN1
Source (NMDE2_RAT)
Sequence D:  PPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVELV
AMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQI
LDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIE
QQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIE
NSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLY
CTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPS
EFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEH
SFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSF
SEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVW
PRMCDHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKR
YIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKIN
GTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIE
TGISVMVSRSNSPSAFLEPFSACVWVMMFVMLLIVSAVAV
FVFEFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVW
AFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPN
DFSPPFRFGTVPNGSTERNIRNNYAEMHAYMGKFNQRGVD
DALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGK
VFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEAL
WLTGICHNEKMSSQLDIDNMAGVFYMLGAAMALSLITFIS
EHLF
Description (1)  N-METHYL-D-ASPARTATE RECEPTOR GLUN1, N-METHYL-D-ASPARTATE RECEPTOR GLUN2B


Functional site

1) chain D
residue 348
type CARBOHYD
sequence D
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI11

2) chain D
residue 491
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI11

3) chain D
residue 542
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI11

4) chain D
residue 688
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:24876489, ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI12

5) chain D
residue 127
type BINDING
sequence H
description BINDING => ECO:0000305|PubMed:19910922, ECO:0007744|PDB:3JPY
source Swiss-Prot : SWS_FT_FI5

6) chain D
residue 284
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:19910922, ECO:0007744|PDB:3JPY
source Swiss-Prot : SWS_FT_FI5

7) chain D
residue 514
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:24876489, ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI6

8) chain D
residue 519
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:24876489, ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI6

9) chain D
residue 732
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:24876489, ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI6

10) chain D
residue 690
type BINDING
sequence S
description BINDING => ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI7

11) chain D
residue 615
type SITE
sequence N
description Functional determinant of NMDA receptors => ECO:0000250
source Swiss-Prot : SWS_FT_FI8

12) chain D
residue 74
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19910922, ECO:0000269|PubMed:24876489, ECO:0007744|PDB:3JPW, ECO:0007744|PDB:3JPY, ECO:0007744|PDB:3QEL, ECO:0007744|PDB:3QEM, ECO:0007744|PDB:4PE5
source Swiss-Prot : SWS_FT_FI9

13) chain D
residue 647-817
type TOPO_DOM
sequence TANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTV
PNGSTERNIRNNYAEMHAYMGKFNQRGVDDALLSLKTGKL
DAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAI
QKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKM
SSQLDIDN
description Extracellular => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI1

14) chain D
residue 558-576
type TRANSMEM
sequence VWVMMFVMLLIVSAVAVFV
description Helical => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI2

15) chain D
residue 631-646
type TRANSMEM
sequence MVSVWAFFAVIFLASY
description Helical => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI2

16) chain D
residue 818-837
type TRANSMEM
sequence MAGVFYMLGAAMALSLITFI
description Helical => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI2

17) chain D
residue 577-603
type TOPO_DOM
sequence FEFTIG
description Cytoplasmic => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI3

18) chain D
residue 624-630
type TOPO_DOM
sequence KGTTSKI
description Cytoplasmic => ECO:0000269|PubMed:24876489
source Swiss-Prot : SWS_FT_FI3

19) chain D
residue 604-623
type INTRAMEM
sequence KAIWLLWGLVFNNSVPVQNP
description Discontinuously helical => ECO:0000305|PubMed:24876489
source Swiss-Prot : SWS_FT_FI4

20) chain D
residue 341
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19910922, ECO:0000269|PubMed:24876489, ECO:0007744|PDB:3JPW, ECO:0007744|PDB:3JPY, ECO:0007744|PDB:3QEL, ECO:0007744|PDB:3QEM, ECO:0007744|PDB:4PE5, ECO:0007744|PDB:5TPZ
source Swiss-Prot : SWS_FT_FI10


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