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eF-site ID
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5flx-C |
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PDB Code
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5flx |
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Chain
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C |
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click to enlarge
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Title
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Mammalian 40S HCV-IRES complex |
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Classification
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RIBOSOME |
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Compound
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18S RRNA |
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Source
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ORGANISM_COMMON: RABBIT; ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; |
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Sequence
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C: |
DKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDF
FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGH
VGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGK
PHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMM
AGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW
KETVFTKSPYQEFTDHLVKTHT
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Description
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(1) |
40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6, 40S RIBOSOMAL PROTEIN S7, 40S RIBOSOMAL PROTEIN S8, 40S RIBOSOMAL PROTEIN S9, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16, 40S RIBOSOMAL PROTEIN S17, 40S RIBOSOMAL PROTEIN S18, 40S RIBOSOMAL PROTEIN S19, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21, 40S RIBOSOMAL PROTEIN S15A, 40S RIBOSOMAL PROTEIN S23, 40S RIBOSOMAL PROTEIN S24, 40S RIBOSOMAL PROTEIN S25, 40S RIBOSOMAL PROTEIN S26, 40S RIBOSOMAL PROTEIN S27, 40S RIBOSOMAL PROTEIN S28, 40S RIBOSOMAL PROTEIN S29, 40S RIBOSOMAL PROTEIN S30, UBIQUITIN-40S RIBOSOMAL PROTEIN S27A, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1/RNA Complex
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Functional site
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1)
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chain |
C |
| residue |
119-151 |
| type |
prosite |
| sequence |
GQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAI
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| description |
RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvAIGDyn.GhVGlGvkcsk.EVat.AI
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| source |
prosite : PS00585
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2)
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chain |
C |
| residue |
275 |
| type |
MOD_RES |
| sequence |
K
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| description |
Phosphoserine; by viral VacV B1 kinase => ECO:0000269|PubMed:28636603, ECO:0007744|PubMed:23186163
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| source |
Swiss-Prot : SWS_FT_FI8
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