eF-site ID 5flx-1z
PDB Code 5flx
Chain 1, z

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Title Mammalian 40S HCV-IRES complex
Classification RIBOSOME
Compound 18S RRNA
Source ORGANISM_COMMON: RABBIT; ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS;
Sequence 1:  UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAA
GAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAG
UGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUU
UGGUCGACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUAC
AUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGU
GCAUUUAUCAGAUCAAAACCAACCCGGGCUUUGGUGACUC
UAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCG
ACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGU
AGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAA
UCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUA
CCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACU
CCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG
ACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAA
AUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCC
AGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAA
GUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGC
GGCCCCUUGCCUCUCGCCCGAAGCGUUUACUUUGAAAAAA
UUAGAGUGUUCAAAGCAGGCCCGAGCCGCCUGGAUACCGC
AGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUU
GGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGG
GGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGAC
CGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAU
GUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGAC
GAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGA
CCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCA
GCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA
UGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGC
ACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACA
CGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACA
GAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAU
GGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUC
CGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCG
ACCCCCGAGCGGUAACUUCUUAGAGGGACAAGUGGCGUUC
AGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCU
UAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUC
AGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCG
UUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAU
UCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAA
GCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCC
CGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGG
AUCGGCCCCGCCGUGGCGGAGCGCUGAGAAGACGGUCGAA
CUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUC
CGUAGGUGAACCUGCGGAAGGAUCAUUA
z:  CCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGC
CAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCC
CCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAG
UACACCGGAAUGAUUUGGGCGUGCCCCCGCAAGACUGCUA
GCCGAGUAGUGUUGGGUCGCGAAAGGCCUUGUGGUACUGC
CUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGA
CCGUGCACCAUGAGCACGAAUCCU
Description (1)  40S RIBOSOMAL PROTEIN SA, 40S RIBOSOMAL PROTEIN S3A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6, 40S RIBOSOMAL PROTEIN S7, 40S RIBOSOMAL PROTEIN S8, 40S RIBOSOMAL PROTEIN S9, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16, 40S RIBOSOMAL PROTEIN S17, 40S RIBOSOMAL PROTEIN S18, 40S RIBOSOMAL PROTEIN S19, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21, 40S RIBOSOMAL PROTEIN S15A, 40S RIBOSOMAL PROTEIN S23, 40S RIBOSOMAL PROTEIN S24, 40S RIBOSOMAL PROTEIN S25, 40S RIBOSOMAL PROTEIN S26, 40S RIBOSOMAL PROTEIN S27, 40S RIBOSOMAL PROTEIN S28, 40S RIBOSOMAL PROTEIN S29, 40S RIBOSOMAL PROTEIN S30, UBIQUITIN-40S RIBOSOMAL PROTEIN S27A, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1/RNA Complex


Functional site

1) chain z
residue 342
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1902
source : AC1

2) chain 1
residue 598
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1904
source : AC2

3) chain 1
residue 1243
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1906
source : AC3

4) chain 1
residue 1089
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1907
source : AC4

5) chain 1
residue 1104
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1909
source : AC5

6) chain 1
residue 1071
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1911
source : AC6

7) chain 1
residue 19
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1912
source : AC7

8) chain 1
residue 975
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1913
source : AC8

9) chain 1
residue 416
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1914
source : AC9

10) chain 1
residue 417
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1914
source : AC9

11) chain 1
residue 350
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1915
source : BC1

12) chain 1
residue 968
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1917
source : BC2

13) chain 1
residue 94
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1918
source : BC3

14) chain 1
residue 1360
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1919
source : BC4

15) chain 1
residue 1361
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1919
source : BC4

16) chain 1
residue 1362
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1919
source : BC4

17) chain 1
residue 1219
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1920
source : BC5

18) chain 1
residue 1831
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1921
source : BC6

19) chain 1
residue 1832
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1921
source : BC6

20) chain 1
residue 1836
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1921
source : BC6

21) chain 1
residue 1837
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1921
source : BC6

22) chain 1
residue 1226
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1922
source : BC7

23) chain 1
residue 1227
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1922
source : BC7

24) chain 1
residue 1832
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

25) chain 1
residue 1836
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

26) chain 1
residue 1837
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

27) chain 1
residue 1838
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

28) chain 1
residue 1839
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

29) chain 1
residue 1840
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1923
source : BC8

30) chain 1
residue 1518
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1924
source : BC9

31) chain 1
residue 1519
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1924
source : BC9

32) chain 1
residue 679
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1925
source : CC1

33) chain 1
residue 676
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1926
source : CC2

34) chain 1
residue 1025
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1926
source : CC2

35) chain 1
residue 672
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1927
source : CC3

36) chain 1
residue 674
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1927
source : CC3

37) chain 1
residue 1035
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1928
source : CC4

38) chain 1
residue 1331
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1929
source : CC5

39) chain 1
residue 1490
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1929
source : CC5

40) chain 1
residue 1491
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1929
source : CC5

41) chain 1
residue 1330
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1930
source : CC6

42) chain 1
residue 1334
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1930
source : CC6

43) chain 1
residue 1335
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1930
source : CC6

44) chain 1
residue 1336
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1930
source : CC6

45) chain 1
residue 1492
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1930
source : CC6

46) chain 1
residue 1245
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1931
source : CC7

47) chain 1
residue 1246
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1931
source : CC7

48) chain 1
residue 1492
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1931
source : CC7

49) chain 1
residue 667
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1932
source : CC8

50) chain 1
residue 668
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1932
source : CC8

51) chain 1
residue 669
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1932
source : CC8

52) chain 1
residue 670
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1932
source : CC8

53) chain 1
residue 668
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1933
source : CC9

54) chain 1
residue 1652
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1935
source : DC1

55) chain 1
residue 1653
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1935
source : DC1

56) chain 1
residue 1223
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1936
source : DC2

57) chain 1
residue 1224
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1936
source : DC2

58) chain 1
residue 1224
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1937
source : DC3

59) chain 1
residue 1225
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1937
source : DC3

60) chain 1
residue 1330
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1938
source : DC4

61) chain 1
residue 1331
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1938
source : DC4

62) chain 1
residue 385
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1939
source : DC5

63) chain 1
residue 389
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1939
source : DC5

64) chain 1
residue 449
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1940
source : DC6

65) chain 1
residue 450
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1940
source : DC6

66) chain 1
residue 1120
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1941
source : DC7

67) chain 1
residue 1121
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1941
source : DC7

68) chain 1
residue 601
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1942
source : DC8

69) chain 1
residue 604
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1942
source : DC8

70) chain 1
residue 605
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1942
source : DC8

71) chain 1
residue 99
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1943
source : DC9

72) chain 1
residue 100
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1943
source : DC9

73) chain 1
residue 407
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1943
source : DC9

74) chain 1
residue 409
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1943
source : DC9

75) chain 1
residue 1660
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1944
source : EC1

76) chain 1
residue 1659
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1945
source : EC2

77) chain 1
residue 1664
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1945
source : EC2

78) chain 1
residue 1227
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1946
source : EC3

79) chain 1
residue 1525
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1946
source : EC3

80) chain 1
residue 1526
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1947
source : EC4

81) chain 1
residue 1527
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1947
source : EC4

82) chain 1
residue 1604
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1948
source : EC5

83) chain 1
residue 1605
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1948
source : EC5

84) chain 1
residue 1606
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1948
source : EC5

85) chain 1
residue 673
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1949
source : EC6

86) chain 1
residue 1082
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1949
source : EC6

87) chain 1
residue 16
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1950
source : EC7

88) chain 1
residue 684
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1951
source : EC8

89) chain 1
residue 685
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1951
source : EC8

90) chain 1
residue 1352
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1952
source : EC9

91) chain 1
residue 1353
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1952
source : EC9

92) chain 1
residue 472
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1954
source : FC1

93) chain 1
residue 48
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1955
source : FC2

94) chain 1
residue 473
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1955
source : FC2

95) chain 1
residue 421
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1956
source : FC3

96) chain 1
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1957
source : FC4

97) chain 1
residue 16
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1957
source : FC4

98) chain 1
residue 1048
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1958
source : FC5

99) chain 1
residue 1067
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1958
source : FC5

100) chain 1
residue 1068
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1958
source : FC5

101) chain 1
residue 1441
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1959
source : FC6

102) chain 1
residue 1442
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1959
source : FC6

103) chain 1
residue 1443
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1959
source : FC6

104) chain 1
residue 1497
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1960
source : FC7

105) chain 1
residue 619
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1961
source : FC8

106) chain 1
residue 620
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1961
source : FC8

107) chain 1
residue 1256
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1962
source : FC9

108) chain 1
residue 1258
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1962
source : FC9

109) chain 1
residue 1341
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1963
source : GC1

110) chain 1
residue 1602
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1964
source : GC2

111) chain 1
residue 1603
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1964
source : GC2

112) chain 1
residue 1605
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1964
source : GC2

113) chain 1
residue 94
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1965
source : GC3

114) chain 1
residue 450
type
sequence C
description BINDING SITE FOR RESIDUE MG 1 1965
source : GC3

115) chain 1
residue 451
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1965
source : GC3

116) chain 1
residue 1702
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1966
source : GC4

117) chain z
residue 344
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1966
source : GC4

118) chain z
residue 345
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1966
source : GC4

119) chain 1
residue 1694
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1967
source : GC5

120) chain 1
residue 1862
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1967
source : GC5

121) chain 1
residue 349
type
sequence A
description BINDING SITE FOR RESIDUE MG 1 1968
source : GC6

122) chain 1
residue 432
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1968
source : GC6

123) chain 1
residue 1041
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1969
source : GC7

124) chain 1
residue 1040
type
sequence G
description BINDING SITE FOR RESIDUE MG 1 1970
source : GC8

125) chain 1
residue 1038
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1971
source : GC9

126) chain 1
residue 1721
type
sequence U
description BINDING SITE FOR RESIDUE MG 1 1972
source : HC1

127) chain 1
residue 621
type
sequence C
description BINDING SITE FOR RESIDUE MG X 201
source : HC3


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