eF-site ID 5flm-J
PDB Code 5flm
Chain J

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Title Structure of transcribing mammalian RNA polymerase II
Classification TRANSCRIPTION
Compound DNA-DIRECTED RNA POLYMERASE
Source ORGANISM_COMMON: BOVINE; ORGANISM_SCIENTIFIC: BOS TAURUS;
Sequence J:  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGL
KRYCCRRMLLAHVDLIEKLLNYAPLEK
Description (1)  DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4


Functional site

1) chain J
residue 7
type
sequence C
description BINDING SITE FOR RESIDUE ZN J 1068
source : AC8

2) chain J
residue 10
type
sequence C
description BINDING SITE FOR RESIDUE ZN J 1068
source : AC8

3) chain J
residue 44
type
sequence C
description BINDING SITE FOR RESIDUE ZN J 1068
source : AC8

4) chain J
residue 45
type
sequence C
description BINDING SITE FOR RESIDUE ZN J 1068
source : AC8

5) chain J
residue 10
type MOD_RES
sequence C
description Phosphoserine; by CK2 => ECO:0000250|UniProtKB:O88828
source Swiss-Prot : SWS_FT_FI1

6) chain J
residue 44
type MOD_RES
sequence C
description Phosphoserine; by CK2 => ECO:0000250|UniProtKB:O88828
source Swiss-Prot : SWS_FT_FI1

7) chain J
residue 45
type MOD_RES
sequence C
description Phosphoserine; by CK2 => ECO:0000250|UniProtKB:O88828
source Swiss-Prot : SWS_FT_FI1

8) chain J
residue 2-11
type prosite
sequence IIPVRCFTCG
description RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPVrCFTCG
source prosite : PS01112


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