|
eF-site ID
|
5fja-A |
PDB Code
|
5fja |
Chain
|
A |
|
click to enlarge
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Title
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Cryo-EM structure of yeast RNA polymerase III at 4.7 A |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 |
Source
|
ORGANISM_COMMON: BAKER'S YEAST; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; |
|
Sequence
|
A: |
KEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFD
LEKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHF
GHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKR
QFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALN
GVVKKAAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAH
NPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDAT
VPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV
KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYI
NKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN
LSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNV
HPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHL
EDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCT
PYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS
GEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDG
IEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINL
DAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDK
SVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLG
NRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFN
KGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELD
NWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDG
FQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAI
SGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRT
SANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNIT
FNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVKR
EDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSR
GMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKS
VRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPMNVTLG
VPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVE
KTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTI
EDIAVAITRASKLKIQASDVNIIGKDRIAINVFPSENDVF
YRMQQLRRALPDVVVKGLPDISRAVINIRDDGKRELLVEG
YGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIR
EINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLS
KMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIIL
GQTMSIGTGSFKVVKGTNISEKDLVPKRCLFESLSNEAAL
KAN
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Description
|
(1) |
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2 (E.C.2.7.7.6), DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5, DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2, DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC5, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7
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Functional site
|
|
1)
|
chain |
A |
residue |
67 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2000
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
69 |
type |
|
sequence |
T
|
description |
BINDING SITE FOR RESIDUE ZN A 2000
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
70 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2000
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
77 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2000
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
80 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE ZN A 2000
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
107 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
7)
|
chain |
A |
residue |
109 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
8)
|
chain |
A |
residue |
110 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
9)
|
chain |
A |
residue |
154 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
10)
|
chain |
A |
residue |
156 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
11)
|
chain |
A |
residue |
157 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN A 2001
|
source |
: AC2
|
|
12)
|
chain |
A |
residue |
515 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
13)
|
chain |
A |
residue |
107 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
110 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
15)
|
chain |
A |
residue |
154 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
16)
|
chain |
A |
residue |
511 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
17)
|
chain |
A |
residue |
513 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphothreonine => ECO:0007744|PubMed:18407956
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|