eF-site ID 5fbc-A
PDB Code 5fbc
Chain A

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Title S1 nuclease from Aspergillus oryzae in complex with 2'-deoxyadenosine-5'-thio-monophosphate (5'dAMP(S)).
Classification HYDROLASE
Compound Nuclease S1
Source Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold) (NUS1_ASPOR)
Sequence A:  WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANV
ATWADTYKYTDAGEFSKPYHFIDAQDNPPQSCGVDYDRDC
GSAGCSISAIQNYTNILLESPNGSEALNALKFVVHIIGDI
HQPLHDENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEAA
GGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDP
VSTSMIWAADANTYVCSTVLDDGLAYINSTDLSGEYYDKS
QPVFEELIAKAGYRLAAWLDLIASQPS
Description


Functional site

1) chain A
residue 237-248
type prosite
sequence STVLDDGLAYIN
description SUBTILASE_ASP Serine proteases, subtilase family, aspartic acid active site. STVLDDGLayiN
source prosite : PS00136

2) chain A
residue 21
type BINDING
sequence W
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

3) chain A
residue 26
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

4) chain A
residue 80
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

5) chain A
residue 135
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

6) chain A
residue 139
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

7) chain A
residue 145
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

8) chain A
residue 168
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

9) chain A
residue 172
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI1

10) chain A
residue 65
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF
source Swiss-Prot : SWS_FT_FI2

11) chain A
residue 93
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:P24289
source Swiss-Prot : SWS_FT_FI3

12) chain A
residue 65
type SITE
sequence D
description Important for catalytic activity => ECO:0000269|PubMed:28036383
source Swiss-Prot : SWS_FT_FI4

13) chain A
residue 68
type SITE
sequence K
description Important for catalytic activity => ECO:0000250|UniProtKB:P24289
source Swiss-Prot : SWS_FT_FI5

14) chain A
residue 112
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBD, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI6

15) chain A
residue 122
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
source Swiss-Prot : SWS_FT_FI7

16) chain A
residue 248
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:28036383, ECO:0007744|PDB:5FB9, ECO:0007744|PDB:5FBA, ECO:0007744|PDB:5FBB, ECO:0007744|PDB:5FBC, ECO:0007744|PDB:5FBF, ECO:0007744|PDB:5FBG
source Swiss-Prot : SWS_FT_FI8


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