eF-site ID 5ecd-AB
PDB Code 5ecd
Chain A, B

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Title Structure of the Shigella flexneri VapC mutant D98N crystal form 1
Classification HYDROLASE
Compound tRNA(fMet)-specific endonuclease VapC
Source Shigella flexneri (VAPC_SHIFL)
Sequence A:  HLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTL
MELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHT
GQIRAELARQGRPVGPFNQMIAGHARSRGLIIVTNNTREF
ERVGGLRTEDWS
B:  HLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTL
MELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHT
GQIRAELARQGRPVGPFNQMIAGHARSRGLIIVTNNTREF
ERVGGLRTEDWS
Description (1)  tRNA(fMet)-specific endonuclease VapC (E.C.3.1.-.-)


Functional site

1) chain A
residue 9
type
sequence N
description binding site for residue EPE A 201
source : AC1

2) chain A
residue 42
type
sequence E
description binding site for residue EPE A 201
source : AC1

3) chain A
residue 95
type
sequence G
description binding site for residue EPE A 201
source : AC1

4) chain A
residue 96
type
sequence P
description binding site for residue EPE A 201
source : AC1

5) chain A
residue 97
type
sequence F
description binding site for residue EPE A 201
source : AC1

6) chain A
residue 98
type
sequence N
description binding site for residue EPE A 201
source : AC1

7) chain B
residue 9
type
sequence N
description binding site for residue EPE B 201
source : AC2

8) chain B
residue 42
type
sequence E
description binding site for residue EPE B 201
source : AC2

9) chain B
residue 95
type
sequence G
description binding site for residue EPE B 201
source : AC2

10) chain B
residue 96
type
sequence P
description binding site for residue EPE B 201
source : AC2

11) chain B
residue 97
type
sequence F
description binding site for residue EPE B 201
source : AC2

12) chain B
residue 98
type
sequence N
description binding site for residue EPE B 201
source : AC2

13) chain A
residue 7
type BINDING
sequence D
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 98
type BINDING
sequence N
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

15) chain B
residue 7
type BINDING
sequence D
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

16) chain B
residue 98
type BINDING
sequence N
description BINDING => ECO:0000255
source Swiss-Prot : SWS_FT_FI1


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