eF-site ID 5e7c-D PDB Code 5e7c Chain D click to enlarge Title Macromolecular diffractive imaging using imperfect crystals - Bragg data Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLT GTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLL LLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQF EIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA PSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALL CAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTAN RFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLA LNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMA PQDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 317 type sequence K description binding site for residue CL A 602 source : AC2 2) chain D residue 214 type sequence H description binding site for residue BCT A 604 source : AC4 3) chain D residue 244 type sequence Y description binding site for residue BCT A 604 source : AC4 4) chain D residue 268 type sequence H description binding site for residue BCT A 604 source : AC4 5) chain D residue 182 type sequence L description binding site for residue CLA A 605 source : AC5 6) chain D residue 205 type sequence L description binding site for residue CLA A 605 source : AC5 7) chain D residue 157 type sequence F description binding site for residue CLA A 606 source : AC6 8) chain D residue 175 type sequence V description binding site for residue CLA A 606 source : AC6 9) chain D residue 178 type sequence I description binding site for residue CLA A 606 source : AC6 10) chain D residue 179 type sequence F description binding site for residue CLA A 606 source : AC6 11) chain D residue 182 type sequence L description binding site for residue CLA A 606 source : AC6 12) chain D residue 205 type sequence L description binding site for residue PHO A 607 source : AC7 13) chain D residue 209 type sequence L description binding site for residue PHO A 607 source : AC7 14) chain D residue 213 type sequence I description binding site for residue PHO A 607 source : AC7 15) chain D residue 253 type sequence W description binding site for residue PHO A 607 source : AC7 16) chain D residue 30 type sequence V description binding site for residue PL9 A 610 source : AD1 17) chain D residue 39 type sequence P description binding site for residue PL9 A 610 source : AD1 18) chain D residue 41 type sequence A description binding site for residue PL9 A 610 source : AD1 19) chain D residue 42 type sequence Y description binding site for residue PL9 A 610 source : AD1 20) chain D residue 233 type sequence R description binding site for residue SQD A 611 source : AD2 21) chain D residue 214 type sequence H description binding site for residue FE2 A 613 source : AD4 22) chain D residue 268 type sequence H description binding site for residue FE2 A 613 source : AD4 23) chain D residue 120 type sequence F description binding site for residue CLA B 609 source : AE4 24) chain D residue 127 type sequence L description binding site for residue CLA B 609 source : AE4 25) chain D residue 150 type sequence I description binding site for residue CLA B 609 source : AE4 26) chain D residue 141 type sequence Y description binding site for residue LHG B 622 source : AF8 27) chain D residue 144 type sequence I description binding site for residue LHG B 622 source : AF8 28) chain D residue 266 type sequence W description binding site for residue LHG B 622 source : AF8 29) chain D residue 269 type sequence F description binding site for residue LHG B 622 source : AF8 30) chain D residue 277 type sequence T description binding site for residue LHG B 622 source : AF8 31) chain D residue 72 type sequence N description binding site for residue DGD C 518 source : AH9 32) chain D residue 41 type sequence A description binding site for residue PHO D 401 source : AI4 33) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AI4 34) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AI4 35) chain D residue 118 type sequence G description binding site for residue PHO D 401 source : AI4 36) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI4 37) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AI4 38) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI4 39) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI4 40) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI4 41) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AI4 42) chain D residue 149 type sequence P description binding site for residue PHO D 401 source : AI4 43) chain D residue 153 type sequence F description binding site for residue PHO D 401 source : AI4 44) chain D residue 279 type sequence L description binding site for residue PHO D 401 source : AI4 45) chain D residue 198 type sequence M description binding site for residue CLA D 402 source : AI5 46) chain D residue 201 type sequence V description binding site for residue CLA D 402 source : AI5 47) chain D residue 202 type sequence A description binding site for residue CLA D 402 source : AI5 48) chain D residue 205 type sequence L description binding site for residue CLA D 402 source : AI5 49) chain D residue 206 type sequence G description binding site for residue CLA D 402 source : AI5 50) chain D residue 45 type sequence L description binding site for residue CLA D 403 source : AI6 51) chain D residue 122 type sequence L description binding site for residue CLA D 403 source : AI6 52) chain D residue 149 type sequence P description binding site for residue CLA D 403 source : AI6 53) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AI6 54) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AI6 55) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AI6 56) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AI6 57) chain D residue 186 type sequence Q description binding site for residue CLA D 403 source : AI6 58) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AI6 59) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AI6 60) chain D residue 201 type sequence V description binding site for residue CLA D 403 source : AI6 61) chain D residue 204 type sequence V description binding site for residue CLA D 403 source : AI6 62) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AI6 63) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AI6 64) chain D residue 286 type sequence V description binding site for residue CLA D 403 source : AI6 65) chain D residue 35 type sequence I description binding site for residue CLA D 404 source : AI7 66) chain D residue 39 type sequence P description binding site for residue CLA D 404 source : AI7 67) chain D residue 40 type sequence C description binding site for residue CLA D 404 source : AI7 68) chain D residue 43 type sequence L description binding site for residue CLA D 404 source : AI7 69) chain D residue 89 type sequence L description binding site for residue CLA D 404 source : AI7 70) chain D residue 90 type sequence L description binding site for residue CLA D 404 source : AI7 71) chain D residue 91 type sequence L description binding site for residue CLA D 404 source : AI7 72) chain D residue 92 type sequence L description binding site for residue CLA D 404 source : AI7 73) chain D residue 93 type sequence W description binding site for residue CLA D 404 source : AI7 74) chain D residue 104 type sequence W description binding site for residue CLA D 404 source : AI7 75) chain D residue 112 type sequence T description binding site for residue CLA D 404 source : AI7 76) chain D residue 113 type sequence F description binding site for residue CLA D 404 source : AI7 77) chain D residue 117 type sequence H description binding site for residue CLA D 404 source : AI7 78) chain D residue 198 type sequence M description binding site for residue PL9 D 405 source : AI8 79) chain D residue 199 type sequence M description binding site for residue PL9 D 405 source : AI8 80) chain D residue 202 type sequence A description binding site for residue PL9 D 405 source : AI8 81) chain D residue 209 type sequence L description binding site for residue PL9 D 405 source : AI8 82) chain D residue 214 type sequence H description binding site for residue PL9 D 405 source : AI8 83) chain D residue 217 type sequence T description binding site for residue PL9 D 405 source : AI8 84) chain D residue 253 type sequence W description binding site for residue PL9 D 405 source : AI8 85) chain D residue 260 type sequence A description binding site for residue PL9 D 405 source : AI8 86) chain D residue 261 type sequence F description binding site for residue PL9 D 405 source : AI8 87) chain D residue 267 type sequence L description binding site for residue PL9 D 405 source : AI8 88) chain D residue 274 type sequence V description binding site for residue PL9 D 405 source : AI8 89) chain D residue 278 type sequence G description binding site for residue PL9 D 405 source : AI8 90) chain D residue 99 type sequence G description binding site for residue DGD D 406 source : AI9 91) chain D residue 100 type sequence D description binding site for residue DGD D 406 source : AI9 92) chain D residue 102 type sequence T description binding site for residue DGD D 406 source : AI9 93) chain D residue 256 type sequence I description binding site for residue LHG D 407 source : AJ1 94) chain D residue 257 type sequence F description binding site for residue LHG D 407 source : AJ1 95) chain D residue 259 type sequence I description binding site for residue LHG D 407 source : AJ1 96) chain D residue 260 type sequence A description binding site for residue LHG D 407 source : AJ1 97) chain D residue 261 type sequence F description binding site for residue LHG D 407 source : AJ1 98) chain D residue 262 type sequence S description binding site for residue LHG D 407 source : AJ1 99) chain D residue 263 type sequence N description binding site for residue LHG D 407 source : AJ1 100) chain D residue 266 type sequence W description binding site for residue LHG D 407 source : AJ1 101) chain D residue 270 type sequence F description binding site for residue LHG D 407 source : AJ1 102) chain D residue 219 type sequence E description binding site for residue LHG D 408 source : AJ2 103) chain D residue 220 type sequence N description binding site for residue LHG D 408 source : AJ2 104) chain D residue 229 type sequence A description binding site for residue LHG D 408 source : AJ2 105) chain D residue 230 type sequence S description binding site for residue LHG D 408 source : AJ2 106) chain D residue 231 type sequence T description binding site for residue LHG D 408 source : AJ2 107) chain D residue 232 type sequence F description binding site for residue LHG D 408 source : AJ2 108) chain D residue 27 type sequence F description binding site for residue LHG E 101 source : AJ3 109) chain D residue 128 type sequence R description binding site for residue LHG E 101 source : AJ3 110) chain D residue 43 type sequence L description binding site for residue BCR F 101 source : AJ5 111) chain D residue 46 type sequence G description binding site for residue BCR F 101 source : AJ5 112) chain D residue 47 type sequence G description binding site for residue BCR F 101 source : AJ5 113) chain D residue 49 type sequence L description binding site for residue BCR F 101 source : AJ5 114) chain D residue 101 type sequence F description binding site for residue BCR F 101 source : AJ5 115) chain D residue 113 type sequence F description binding site for residue BCR F 101 source : AJ5 116) chain D residue 87 type sequence H description binding site for residue DGD H 102 source : AJ8 117) chain D residue 159 type sequence I description binding site for residue DGD H 102 source : AJ8 118) chain D residue 162 type sequence L description binding site for residue DGD H 102 source : AJ8 119) chain D residue 67 type sequence Y description binding site for residue LMG J 101 source : AJ9 120) chain D residue 70 type sequence G description binding site for residue LMG J 101 source : AJ9 121) chain D residue 71 type sequence C description binding site for residue LMG J 101 source : AJ9 122) chain D residue 72 type sequence N description binding site for residue LMG J 101 source : AJ9 123) chain D residue 73 type sequence F description binding site for residue LMG J 101 source : AJ9 124) chain D residue 266 type sequence W description binding site for residue LHG L 101 source : AK3 125) chain D residue 273 type sequence F description binding site for residue LHG L 101 source : AK3 126) chain D residue 21 type sequence W description binding site for residue SQD X 101 source : AK7 127) chain D residue 24 type sequence R description binding site for residue SQD X 101 source : AK7 128) chain D residue 26 type sequence R description binding site for residue SQD X 101 source : AK7 129) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 130) chain D residue 129 type BINDING sequence Q description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI5 131) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 132) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 133) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 134) chain D residue 141-160 type TOPO_DOM sequence YNAIAFSAPIAVFVSVFLIY description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 135) chain D residue 194-217 type TOPO_DOM sequence NPFHMMGVAGVLGGALLCAIHGAT description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 136) chain D residue 266-288 type TOPO_DOM sequence WLHFFMLFVPVTGLWMSAIGVVG description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 137) chain D residue 289-352 type TRANSMEM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 138) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9 139) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244

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