eF-site ID 5e7c-d PDB Code 5e7c Chain d click to enlarge Title Macromolecular diffractive imaging using imperfect crystals - Bragg data Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence d:  ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLT GTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLL LLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQF EIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA PSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALL CAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTAN RFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLA LNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMA PQDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain d residue 317 type sequence K description binding site for residue CL a 602 source : AL1 2) chain d residue 321 type sequence L description binding site for residue CL a 602 source : AL1 3) chain d residue 214 type sequence H description binding site for residue BCT a 603 source : AL2 4) chain d residue 244 type sequence Y description binding site for residue BCT a 603 source : AL2 5) chain d residue 268 type sequence H description binding site for residue BCT a 603 source : AL2 6) chain d residue 205 type sequence L description binding site for residue CLA a 604 source : AL3 7) chain d residue 157 type sequence F description binding site for residue CLA a 605 source : AL4 8) chain d residue 175 type sequence V description binding site for residue CLA a 605 source : AL4 9) chain d residue 178 type sequence I description binding site for residue CLA a 605 source : AL4 10) chain d residue 179 type sequence F description binding site for residue CLA a 605 source : AL4 11) chain d residue 182 type sequence L description binding site for residue CLA a 605 source : AL4 12) chain d residue 205 type sequence L description binding site for residue PHO a 606 source : AL5 13) chain d residue 208 type sequence A description binding site for residue PHO a 606 source : AL5 14) chain d residue 209 type sequence L description binding site for residue PHO a 606 source : AL5 15) chain d residue 213 type sequence I description binding site for residue PHO a 606 source : AL5 16) chain d residue 253 type sequence W description binding site for residue PHO a 606 source : AL5 17) chain d residue 257 type sequence F description binding site for residue PHO a 606 source : AL5 18) chain d residue 30 type sequence V description binding site for residue PL9 a 609 source : AL8 19) chain d residue 38 type sequence F description binding site for residue PL9 a 609 source : AL8 20) chain d residue 39 type sequence P description binding site for residue PL9 a 609 source : AL8 21) chain d residue 41 type sequence A description binding site for residue PL9 a 609 source : AL8 22) chain d residue 42 type sequence Y description binding site for residue PL9 a 609 source : AL8 23) chain d residue 232 type sequence F description binding site for residue SQD a 610 source : AL9 24) chain d residue 233 type sequence R description binding site for residue SQD a 610 source : AL9 25) chain d residue 198 type sequence M description binding site for residue CLA a 613 source : AM3 26) chain d residue 201 type sequence V description binding site for residue CLA a 613 source : AM3 27) chain d residue 202 type sequence A description binding site for residue CLA a 613 source : AM3 28) chain d residue 205 type sequence L description binding site for residue CLA a 613 source : AM3 29) chain d residue 206 type sequence G description binding site for residue CLA a 613 source : AM3 30) chain d residue 219 type sequence E description binding site for residue LHG a 614 source : AM4 31) chain d residue 220 type sequence N description binding site for residue LHG a 614 source : AM4 32) chain d residue 229 type sequence A description binding site for residue LHG a 614 source : AM4 33) chain d residue 230 type sequence S description binding site for residue LHG a 614 source : AM4 34) chain d residue 231 type sequence T description binding site for residue LHG a 614 source : AM4 35) chain d residue 232 type sequence F description binding site for residue LHG a 614 source : AM4 36) chain d residue 214 type sequence H description binding site for residue FE2 a 615 source : AM5 37) chain d residue 268 type sequence H description binding site for residue FE2 a 615 source : AM5 38) chain d residue 150 type sequence I description binding site for residue CLA b 611 source : AN7 39) chain d residue 284 type sequence I description binding site for residue LMG b 623 source : AP1 40) chain d residue 141 type sequence Y description binding site for residue LHG b 624 source : AP2 41) chain d residue 144 type sequence I description binding site for residue LHG b 624 source : AP2 42) chain d residue 266 type sequence W description binding site for residue LHG b 624 source : AP2 43) chain d residue 269 type sequence F description binding site for residue LHG b 624 source : AP2 44) chain d residue 277 type sequence T description binding site for residue LHG b 624 source : AP2 45) chain d residue 74 type sequence L description binding site for residue DGD c 519 source : AR3 46) chain d residue 41 type sequence A description binding site for residue PHO d 401 source : AR7 47) chain d residue 48 type sequence W description binding site for residue PHO d 401 source : AR7 48) chain d residue 114 type sequence I description binding site for residue PHO d 401 source : AR7 49) chain d residue 118 type sequence G description binding site for residue PHO d 401 source : AR7 50) chain d residue 121 type sequence G description binding site for residue PHO d 401 source : AR7 51) chain d residue 122 type sequence L description binding site for residue PHO d 401 source : AR7 52) chain d residue 125 type sequence F description binding site for residue PHO d 401 source : AR7 53) chain d residue 129 type sequence Q description binding site for residue PHO d 401 source : AR7 54) chain d residue 142 type sequence N description binding site for residue PHO d 401 source : AR7 55) chain d residue 145 type sequence A description binding site for residue PHO d 401 source : AR7 56) chain d residue 146 type sequence F description binding site for residue PHO d 401 source : AR7 57) chain d residue 149 type sequence P description binding site for residue PHO d 401 source : AR7 58) chain d residue 153 type sequence F description binding site for residue PHO d 401 source : AR7 59) chain d residue 275 type sequence P description binding site for residue PHO d 401 source : AR7 60) chain d residue 279 type sequence L description binding site for residue PHO d 401 source : AR7 61) chain d residue 45 type sequence L description binding site for residue CLA d 402 source : AR8 62) chain d residue 122 type sequence L description binding site for residue CLA d 402 source : AR8 63) chain d residue 149 type sequence P description binding site for residue CLA d 402 source : AR8 64) chain d residue 152 type sequence V description binding site for residue CLA d 402 source : AR8 65) chain d residue 153 type sequence F description binding site for residue CLA d 402 source : AR8 66) chain d residue 156 type sequence V description binding site for residue CLA d 402 source : AR8 67) chain d residue 182 type sequence L description binding site for residue CLA d 402 source : AR8 68) chain d residue 185 type sequence F description binding site for residue CLA d 402 source : AR8 69) chain d residue 186 type sequence Q description binding site for residue CLA d 402 source : AR8 70) chain d residue 191 type sequence W description binding site for residue CLA d 402 source : AR8 71) chain d residue 197 type sequence H description binding site for residue CLA d 402 source : AR8 72) chain d residue 200 type sequence G description binding site for residue CLA d 402 source : AR8 73) chain d residue 201 type sequence V description binding site for residue CLA d 402 source : AR8 74) chain d residue 282 type sequence S description binding site for residue CLA d 402 source : AR8 75) chain d residue 283 type sequence A description binding site for residue CLA d 402 source : AR8 76) chain d residue 286 type sequence V description binding site for residue CLA d 402 source : AR8 77) chain d residue 39 type sequence P description binding site for residue CLA d 403 source : AR9 78) chain d residue 40 type sequence C description binding site for residue CLA d 403 source : AR9 79) chain d residue 43 type sequence L description binding site for residue CLA d 403 source : AR9 80) chain d residue 89 type sequence L description binding site for residue CLA d 403 source : AR9 81) chain d residue 90 type sequence L description binding site for residue CLA d 403 source : AR9 82) chain d residue 91 type sequence L description binding site for residue CLA d 403 source : AR9 83) chain d residue 92 type sequence L description binding site for residue CLA d 403 source : AR9 84) chain d residue 93 type sequence W description binding site for residue CLA d 403 source : AR9 85) chain d residue 112 type sequence T description binding site for residue CLA d 403 source : AR9 86) chain d residue 113 type sequence F description binding site for residue CLA d 403 source : AR9 87) chain d residue 117 type sequence H description binding site for residue CLA d 403 source : AR9 88) chain d residue 198 type sequence M description binding site for residue PL9 d 404 source : AS1 89) chain d residue 199 type sequence M description binding site for residue PL9 d 404 source : AS1 90) chain d residue 202 type sequence A description binding site for residue PL9 d 404 source : AS1 91) chain d residue 209 type sequence L description binding site for residue PL9 d 404 source : AS1 92) chain d residue 214 type sequence H description binding site for residue PL9 d 404 source : AS1 93) chain d residue 217 type sequence T description binding site for residue PL9 d 404 source : AS1 94) chain d residue 253 type sequence W description binding site for residue PL9 d 404 source : AS1 95) chain d residue 260 type sequence A description binding site for residue PL9 d 404 source : AS1 96) chain d residue 261 type sequence F description binding site for residue PL9 d 404 source : AS1 97) chain d residue 267 type sequence L description binding site for residue PL9 d 404 source : AS1 98) chain d residue 273 type sequence F description binding site for residue PL9 d 404 source : AS1 99) chain d residue 274 type sequence V description binding site for residue PL9 d 404 source : AS1 100) chain d residue 277 type sequence T description binding site for residue PL9 d 404 source : AS1 101) chain d residue 278 type sequence G description binding site for residue PL9 d 404 source : AS1 102) chain d residue 99 type sequence G description binding site for residue DGD d 405 source : AS2 103) chain d residue 100 type sequence D description binding site for residue DGD d 405 source : AS2 104) chain d residue 102 type sequence T description binding site for residue DGD d 405 source : AS2 105) chain d residue 257 type sequence F description binding site for residue LHG d 406 source : AS3 106) chain d residue 259 type sequence I description binding site for residue LHG d 406 source : AS3 107) chain d residue 260 type sequence A description binding site for residue LHG d 406 source : AS3 108) chain d residue 261 type sequence F description binding site for residue LHG d 406 source : AS3 109) chain d residue 262 type sequence S description binding site for residue LHG d 406 source : AS3 110) chain d residue 263 type sequence N description binding site for residue LHG d 406 source : AS3 111) chain d residue 266 type sequence W description binding site for residue LHG d 406 source : AS3 112) chain d residue 270 type sequence F description binding site for residue LHG d 406 source : AS3 113) chain d residue 27 type sequence F description binding site for residue LHG e 101 source : AS4 114) chain d residue 42 type sequence Y description binding site for residue BCR f 101 source : AS6 115) chain d residue 43 type sequence L description binding site for residue BCR f 101 source : AS6 116) chain d residue 46 type sequence G description binding site for residue BCR f 101 source : AS6 117) chain d residue 49 type sequence L description binding site for residue BCR f 101 source : AS6 118) chain d residue 50 type sequence T description binding site for residue BCR f 101 source : AS6 119) chain d residue 101 type sequence F description binding site for residue BCR f 101 source : AS6 120) chain d residue 87 type sequence H description binding site for residue DGD h 102 source : AS9 121) chain d residue 123 type sequence I description binding site for residue DGD h 102 source : AS9 122) chain d residue 162 type sequence L description binding site for residue DGD h 102 source : AS9 123) chain d residue 67 type sequence Y description binding site for residue LMG j 101 source : AT1 124) chain d residue 70 type sequence G description binding site for residue LMG j 101 source : AT1 125) chain d residue 71 type sequence C description binding site for residue LMG j 101 source : AT1 126) chain d residue 72 type sequence N description binding site for residue LMG j 101 source : AT1 127) chain d residue 73 type sequence F description binding site for residue LMG j 101 source : AT1 128) chain d residue 266 type sequence W description binding site for residue LHG l 101 source : AT4 129) chain d residue 273 type sequence F description binding site for residue LHG l 101 source : AT4 130) chain d residue 21 type sequence W description binding site for residue SQD x 101 source : AT8 131) chain d residue 24 type sequence R description binding site for residue SQD x 101 source : AT8 132) chain d residue 26 type sequence R description binding site for residue SQD x 101 source : AT8 133) chain d residue 266-288 type TOPO_DOM sequence WLHFFMLFVPVTGLWMSAIGVVG description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 134) chain d residue 32-53 type TOPO_DOM sequence WSGILLFPCAYLALGGWLTGTT description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 135) chain d residue 109-131 type TOPO_DOM sequence GLWTFIALHGAFGLIGFMLRQFE description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 136) chain d residue 141-160 type TOPO_DOM sequence YNAIAFSAPIAVFVSVFLIY description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 137) chain d residue 194-217 type TOPO_DOM sequence NPFHMMGVAGVLGGALLCAIHGAT description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI1 138) chain d residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 139) chain d residue 54-108 type TRANSMEM sequence FVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLW GPEAQGDFTRWCQLG description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 140) chain d residue 161-193 type TRANSMEM sequence PLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTL description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 141) chain d residue 289-352 type TRANSMEM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 142) chain d residue 132-140 type MOD_RES sequence IARLVGVRP description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI3 143) chain d residue 218-265 type MOD_RES sequence VENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIF GIAFSNKR description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI3 144) chain d residue 129 type BINDING sequence Q description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI5 145) chain d residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 146) chain d residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 147) chain d residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 148) chain d residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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