eF-site ID 5e7c-a PDB Code 5e7c Chain a click to enlarge Title Macromolecular diffractive imaging using imperfect crystals - Bragg data Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 61 type sequence D description binding site for residue OEX a 601 source : AK9 2) chain a residue 170 type sequence D description binding site for residue OEX a 601 source : AK9 3) chain a residue 189 type sequence E description binding site for residue OEX a 601 source : AK9 4) chain a residue 332 type sequence H description binding site for residue OEX a 601 source : AK9 5) chain a residue 333 type sequence E description binding site for residue OEX a 601 source : AK9 6) chain a residue 337 type sequence H description binding site for residue OEX a 601 source : AK9 7) chain a residue 342 type sequence D description binding site for residue OEX a 601 source : AK9 8) chain a residue 344 type sequence A description binding site for residue OEX a 601 source : AK9 9) chain a residue 181 type sequence N description binding site for residue CL a 602 source : AL1 10) chain a residue 332 type sequence H description binding site for residue CL a 602 source : AL1 11) chain a residue 333 type sequence E description binding site for residue CL a 602 source : AL1 12) chain a residue 244 type sequence E description binding site for residue BCT a 603 source : AL2 13) chain a residue 246 type sequence Y description binding site for residue BCT a 603 source : AL2 14) chain a residue 272 type sequence H description binding site for residue BCT a 603 source : AL2 15) chain a residue 147 type sequence Y description binding site for residue CLA a 604 source : AL3 16) chain a residue 150 type sequence P description binding site for residue CLA a 604 source : AL3 17) chain a residue 153 type sequence S description binding site for residue CLA a 604 source : AL3 18) chain a residue 157 type sequence V description binding site for residue CLA a 604 source : AL3 19) chain a residue 183 type sequence M description binding site for residue CLA a 604 source : AL3 20) chain a residue 186 type sequence F description binding site for residue CLA a 604 source : AL3 21) chain a residue 187 type sequence Q description binding site for residue CLA a 604 source : AL3 22) chain a residue 192 type sequence I description binding site for residue CLA a 604 source : AL3 23) chain a residue 193 type sequence L description binding site for residue CLA a 604 source : AL3 24) chain a residue 198 type sequence H description binding site for residue CLA a 604 source : AL3 25) chain a residue 286 type sequence A description binding site for residue CLA a 604 source : AL3 26) chain a residue 287 type sequence A description binding site for residue CLA a 604 source : AL3 27) chain a residue 290 type sequence I description binding site for residue CLA a 604 source : AL3 28) chain a residue 199 type sequence Q description binding site for residue CLA a 605 source : AL4 29) chain a residue 202 type sequence V description binding site for residue CLA a 605 source : AL4 30) chain a residue 203 type sequence A description binding site for residue CLA a 605 source : AL4 31) chain a residue 206 type sequence F description binding site for residue CLA a 605 source : AL4 32) chain a residue 207 type sequence G description binding site for residue CLA a 605 source : AL4 33) chain a residue 210 type sequence L description binding site for residue CLA a 605 source : AL4 34) chain a residue 278 type sequence W description binding site for residue CLA a 605 source : AL4 35) chain a residue 41 type sequence L description binding site for residue PHO a 606 source : AL5 36) chain a residue 44 type sequence A description binding site for residue PHO a 606 source : AL5 37) chain a residue 45 type sequence T description binding site for residue PHO a 606 source : AL5 38) chain a residue 48 type sequence F description binding site for residue PHO a 606 source : AL5 39) chain a residue 126 type sequence Y description binding site for residue PHO a 606 source : AL5 40) chain a residue 130 type sequence Q description binding site for residue PHO a 606 source : AL5 41) chain a residue 146 type sequence A description binding site for residue PHO a 606 source : AL5 42) chain a residue 147 type sequence Y description binding site for residue PHO a 606 source : AL5 43) chain a residue 150 type sequence P description binding site for residue PHO a 606 source : AL5 44) chain a residue 283 type sequence V description binding site for residue PHO a 606 source : AL5 45) chain a residue 36 type sequence I description binding site for residue CLA a 607 source : AL6 46) chain a residue 39 type sequence P description binding site for residue CLA a 607 source : AL6 47) chain a residue 40 type sequence T description binding site for residue CLA a 607 source : AL6 48) chain a residue 93 type sequence F description binding site for residue CLA a 607 source : AL6 49) chain a residue 95 type sequence P description binding site for residue CLA a 607 source : AL6 50) chain a residue 96 type sequence I description binding site for residue CLA a 607 source : AL6 51) chain a residue 97 type sequence W description binding site for residue CLA a 607 source : AL6 52) chain a residue 114 type sequence L description binding site for residue CLA a 607 source : AL6 53) chain a residue 118 type sequence H description binding site for residue CLA a 607 source : AL6 54) chain a residue 121 type sequence L description binding site for residue CLA a 607 source : AL6 55) chain a residue 39 type sequence P description binding site for residue BCR a 608 source : AL7 56) chain a residue 42 type sequence L description binding site for residue BCR a 608 source : AL7 57) chain a residue 43 type sequence A description binding site for residue BCR a 608 source : AL7 58) chain a residue 47 type sequence C description binding site for residue BCR a 608 source : AL7 59) chain a residue 50 type sequence I description binding site for residue BCR a 608 source : AL7 60) chain a residue 105 type sequence W description binding site for residue BCR a 608 source : AL7 61) chain a residue 106 type sequence L description binding site for residue BCR a 608 source : AL7 62) chain a residue 211 type sequence F description binding site for residue PL9 a 609 source : AL8 63) chain a residue 214 type sequence M description binding site for residue PL9 a 609 source : AL8 64) chain a residue 215 type sequence H description binding site for residue PL9 a 609 source : AL8 65) chain a residue 218 type sequence L description binding site for residue PL9 a 609 source : AL8 66) chain a residue 255 type sequence F description binding site for residue PL9 a 609 source : AL8 67) chain a residue 264 type sequence S description binding site for residue PL9 a 609 source : AL8 68) chain a residue 265 type sequence F description binding site for residue PL9 a 609 source : AL8 69) chain a residue 271 type sequence L description binding site for residue PL9 a 609 source : AL8 70) chain a residue 274 type sequence F description binding site for residue PL9 a 609 source : AL8 71) chain a residue 204 type sequence G description binding site for residue SQD a 610 source : AL9 72) chain a residue 267 type sequence N description binding site for residue SQD a 610 source : AL9 73) chain a residue 270 type sequence S description binding site for residue SQD a 610 source : AL9 74) chain a residue 273 type sequence F description binding site for residue SQD a 610 source : AL9 75) chain a residue 274 type sequence F description binding site for residue SQD a 610 source : AL9 76) chain a residue 278 type sequence W description binding site for residue SQD a 610 source : AL9 77) chain a residue 281 type sequence V description binding site for residue SQD a 610 source : AL9 78) chain a residue 282 type sequence G description binding site for residue SQD a 610 source : AL9 79) chain a residue 93 type sequence F description binding site for residue LMG a 611 source : AM1 80) chain a residue 97 type sequence W description binding site for residue LMG a 611 source : AM1 81) chain a residue 98 type sequence E description binding site for residue LMG a 611 source : AM1 82) chain a residue 117 type sequence F description binding site for residue LMG a 611 source : AM1 83) chain a residue 121 type sequence L description binding site for residue LMG a 611 source : AM1 84) chain a residue 124 type sequence S description binding site for residue LMG a 611 source : AM1 85) chain a residue 155 type sequence F description binding site for residue LMG a 611 source : AM1 86) chain a residue 20 type sequence W description binding site for residue SQD a 612 source : AM2 87) chain a residue 26 type sequence N description binding site for residue SQD a 612 source : AM2 88) chain a residue 27 type sequence R description binding site for residue SQD a 612 source : AM2 89) chain a residue 28 type sequence L description binding site for residue SQD a 612 source : AM2 90) chain a residue 38 type sequence I description binding site for residue SQD a 612 source : AM2 91) chain a residue 157 type sequence V description binding site for residue CLA a 613 source : AM3 92) chain a residue 172 type sequence M description binding site for residue CLA a 613 source : AM3 93) chain a residue 176 type sequence I description binding site for residue CLA a 613 source : AM3 94) chain a residue 179 type sequence T description binding site for residue CLA a 613 source : AM3 95) chain a residue 180 type sequence F description binding site for residue CLA a 613 source : AM3 96) chain a residue 183 type sequence M description binding site for residue CLA a 613 source : AM3 97) chain a residue 140 type sequence R description binding site for residue LHG a 614 source : AM4 98) chain a residue 142 type sequence W description binding site for residue LHG a 614 source : AM4 99) chain a residue 273 type sequence F description binding site for residue LHG a 614 source : AM4 100) chain a residue 215 type sequence H description binding site for residue FE2 a 615 source : AM5 101) chain a residue 272 type sequence H description binding site for residue FE2 a 615 source : AM5 102) chain a residue 232 type sequence S description binding site for residue LHG b 624 source : AP2 103) chain a residue 234 type sequence N description binding site for residue LHG b 624 source : AP2 104) chain a residue 338 type sequence N description binding site for residue CL c 501 source : AP3 105) chain a residue 339 type sequence F description binding site for residue CL c 501 source : AP3 106) chain a residue 33 type sequence F description binding site for residue CLA c 506 source : AP8 107) chain a residue 127 type sequence M description binding site for residue CLA c 506 source : AP8 108) chain a residue 131 type sequence W description binding site for residue CLA c 506 source : AP8 109) chain a residue 91 type sequence L description binding site for residue DGD c 517 source : AR1 110) chain a residue 148 type sequence S description binding site for residue DGD c 517 source : AR1 111) chain a residue 195 type sequence H description binding site for residue DGD c 518 source : AR2 112) chain a residue 197 type sequence F description binding site for residue DGD c 518 source : AR2 113) chain a residue 297 type sequence L description binding site for residue DGD c 518 source : AR2 114) chain a residue 199 type sequence Q description binding site for residue DGD c 519 source : AR3 115) chain a residue 200 type sequence L description binding site for residue DGD c 519 source : AR3 116) chain a residue 301 type sequence N description binding site for residue DGD c 519 source : AR3 117) chain a residue 302 type sequence F description binding site for residue DGD c 519 source : AR3 118) chain a residue 305 type sequence S description binding site for residue DGD c 519 source : AR3 119) chain a residue 206 type sequence F description binding site for residue PHO d 401 source : AR7 120) chain a residue 209 type sequence A description binding site for residue PHO d 401 source : AR7 121) chain a residue 210 type sequence L description binding site for residue PHO d 401 source : AR7 122) chain a residue 214 type sequence M description binding site for residue PHO d 401 source : AR7 123) chain a residue 255 type sequence F description binding site for residue PHO d 401 source : AR7 124) chain a residue 183 type sequence M description binding site for residue CLA d 402 source : AR8 125) chain a residue 206 type sequence F description binding site for residue CLA d 402 source : AR8 126) chain a residue 52 type sequence F description binding site for residue PL9 d 404 source : AS1 127) chain a residue 53 type sequence I description binding site for residue PL9 d 404 source : AS1 128) chain a residue 37 type sequence M description binding site for residue LHG d 406 source : AS3 129) chain a residue 258 type sequence L description binding site for residue LHG e 101 source : AS4 130) chain a residue 260 type sequence F description binding site for residue LHG e 101 source : AS4 131) chain a residue 262 type sequence Y description binding site for residue LHG e 101 source : AS4 132) chain a residue 232 type sequence S description binding site for residue LHG l 101 source : AT4 133) chain a residue 234 type sequence N description binding site for residue LHG l 101 source : AT4 134) chain a residue 28 type sequence L description binding site for residue BCR t 101 source : AT6 135) chain a residue 118 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI4 136) chain a residue 198 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI4 137) chain a residue 126 type BINDING sequence Y description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI5 138) chain a residue 215 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI5 139) chain a residue 272 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI5 140) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 141) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 142) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 143) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 144) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 145) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 146) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 147) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13

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