eF-site ID 5e79-b
PDB Code 5e79
Chain b

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Title Macromolecular diffractive imaging using imperfect crystals
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence b:  GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYE
LATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT
GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLE
LFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL
FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQ
QEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK
GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPA
FFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDG
IFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG
IDPELSPEQVEWGFYQKVGDVTTR
Description


Functional site

1) chain b
residue 113
type
sequence W
description binding site for residue SQD A 614
source : AD5

2) chain b
residue 117
type
sequence Y
description binding site for residue SQD A 614
source : AD5

3) chain b
residue 18
type
sequence R
description binding site for residue SQD L 102
source : AK5

4) chain b
residue 104
type
sequence S
description binding site for residue SQD L 102
source : AK5

5) chain b
residue 108
type
sequence F
description binding site for residue SQD L 102
source : AK5

6) chain b
residue 115
type
sequence W
description binding site for residue SQD L 102
source : AK5

7) chain b
residue 36
type
sequence S
description binding site for residue BCR T 101
source : AK7

8) chain b
residue 37
type
sequence M
description binding site for residue BCR T 101
source : AK7

9) chain b
residue 40
type
sequence Y
description binding site for residue BCR T 101
source : AK7

10) chain b
residue 109
type
sequence L
description binding site for residue BCR T 101
source : AK7

11) chain b
residue 18
type
sequence R
description binding site for residue SQD b 601
source : AN1

12) chain b
residue 29
type
sequence L
description binding site for residue SQD b 601
source : AN1

13) chain b
residue 104
type
sequence S
description binding site for residue SQD b 601
source : AN1

14) chain b
residue 108
type
sequence F
description binding site for residue SQD b 601
source : AN1

15) chain b
residue 115
type
sequence W
description binding site for residue SQD b 601
source : AN1

16) chain b
residue 435
type
sequence E
description binding site for residue CA b 602
source : AN2

17) chain b
residue 438
type
sequence N
description binding site for residue CA b 602
source : AN2

18) chain b
residue 185
type
sequence W
description binding site for residue CLA b 603
source : AN3

19) chain b
residue 187
type
sequence P
description binding site for residue CLA b 603
source : AN3

20) chain b
residue 190
type
sequence F
description binding site for residue CLA b 603
source : AN3

21) chain b
residue 185
type
sequence W
description binding site for residue CLA b 604
source : AN4

22) chain b
residue 189
type
sequence G
description binding site for residue CLA b 604
source : AN4

23) chain b
residue 190
type
sequence F
description binding site for residue CLA b 604
source : AN4

24) chain b
residue 197
type
sequence G
description binding site for residue CLA b 604
source : AN4

25) chain b
residue 200
type
sequence A
description binding site for residue CLA b 604
source : AN4

26) chain b
residue 201
type
sequence H
description binding site for residue CLA b 604
source : AN4

27) chain b
residue 204
type
sequence A
description binding site for residue CLA b 604
source : AN4

28) chain b
residue 205
type
sequence A
description binding site for residue CLA b 604
source : AN4

29) chain b
residue 208
type
sequence V
description binding site for residue CLA b 604
source : AN4

30) chain b
residue 246
type
sequence F
description binding site for residue CLA b 604
source : AN4

31) chain b
residue 247
type
sequence F
description binding site for residue CLA b 604
source : AN4

32) chain b
residue 250
type
sequence F
description binding site for residue CLA b 604
source : AN4

33) chain b
residue 68
type
sequence R
description binding site for residue CLA b 605
source : AN5

34) chain b
residue 69
type
sequence L
description binding site for residue CLA b 605
source : AN5

35) chain b
residue 146
type
sequence A
description binding site for residue CLA b 605
source : AN5

36) chain b
residue 149
type
sequence L
description binding site for residue CLA b 605
source : AN5

37) chain b
residue 150
type
sequence C
description binding site for residue CLA b 605
source : AN5

38) chain b
residue 153
type
sequence F
description binding site for residue CLA b 605
source : AN5

39) chain b
residue 201
type
sequence H
description binding site for residue CLA b 605
source : AN5

40) chain b
residue 202
type
sequence H
description binding site for residue CLA b 605
source : AN5

41) chain b
residue 252
type
sequence V
description binding site for residue CLA b 605
source : AN5

42) chain b
residue 262
type
sequence T
description binding site for residue CLA b 605
source : AN5

43) chain b
residue 33
type
sequence W
description binding site for residue CLA b 606
source : AN6

44) chain b
residue 65
type
sequence F
description binding site for residue CLA b 606
source : AN6

45) chain b
residue 68
type
sequence R
description binding site for residue CLA b 606
source : AN6

46) chain b
residue 149
type
sequence L
description binding site for residue CLA b 606
source : AN6

47) chain b
residue 245
type
sequence V
description binding site for residue CLA b 606
source : AN6

48) chain b
residue 249
type
sequence A
description binding site for residue CLA b 606
source : AN6

49) chain b
residue 252
type
sequence V
description binding site for residue CLA b 606
source : AN6

50) chain b
residue 451
type
sequence F
description binding site for residue CLA b 606
source : AN6

51) chain b
residue 455
type
sequence H
description binding site for residue CLA b 606
source : AN6

52) chain b
residue 458
type
sequence F
description binding site for residue CLA b 606
source : AN6

53) chain b
residue 459
type
sequence A
description binding site for residue CLA b 606
source : AN6

54) chain b
residue 27
type
sequence T
description binding site for residue CLA b 607
source : AN7

55) chain b
residue 30
type
sequence V
description binding site for residue CLA b 607
source : AN7

56) chain b
residue 34
type
sequence A
description binding site for residue CLA b 607
source : AN7

57) chain b
residue 62
type
sequence V
description binding site for residue CLA b 607
source : AN7

58) chain b
residue 66
type
sequence M
description binding site for residue CLA b 607
source : AN7

59) chain b
residue 69
type
sequence L
description binding site for residue CLA b 607
source : AN7

60) chain b
residue 100
type
sequence H
description binding site for residue CLA b 607
source : AN7

61) chain b
residue 103
type
sequence L
description binding site for residue CLA b 607
source : AN7

62) chain b
residue 146
type
sequence A
description binding site for residue CLA b 607
source : AN7

63) chain b
residue 147
type
sequence G
description binding site for residue CLA b 607
source : AN7

64) chain b
residue 150
type
sequence C
description binding site for residue CLA b 607
source : AN7

65) chain b
residue 205
type
sequence A
description binding site for residue CLA b 607
source : AN7

66) chain b
residue 209
type
sequence G
description binding site for residue CLA b 607
source : AN7

67) chain b
residue 71
type
sequence V
description binding site for residue CLA b 608
source : AN8

68) chain b
residue 91
type
sequence W
description binding site for residue CLA b 608
source : AN8

69) chain b
residue 96
type
sequence V
description binding site for residue CLA b 608
source : AN8

70) chain b
residue 102
type
sequence V
description binding site for residue CLA b 608
source : AN8

71) chain b
residue 106
type
sequence L
description binding site for residue CLA b 608
source : AN8

72) chain b
residue 152
type
sequence G
description binding site for residue CLA b 608
source : AN8

73) chain b
residue 153
type
sequence F
description binding site for residue CLA b 608
source : AN8

74) chain b
residue 156
type
sequence F
description binding site for residue CLA b 608
source : AN8

75) chain b
residue 157
type
sequence H
description binding site for residue CLA b 608
source : AN8

76) chain b
residue 162
type
sequence F
description binding site for residue CLA b 608
source : AN8

77) chain b
residue 163
type
sequence G
description binding site for residue CLA b 608
source : AN8

78) chain b
residue 164
type
sequence P
description binding site for residue CLA b 608
source : AN8

79) chain b
residue 33
type
sequence W
description binding site for residue CLA b 609
source : AN9

80) chain b
residue 40
type
sequence Y
description binding site for residue CLA b 609
source : AN9

81) chain b
residue 58
type
sequence Q
description binding site for residue CLA b 609
source : AN9

82) chain b
residue 59
type
sequence G
description binding site for residue CLA b 609
source : AN9

83) chain b
residue 60
type
sequence M
description binding site for residue CLA b 609
source : AN9

84) chain b
residue 61
type
sequence F
description binding site for residue CLA b 609
source : AN9

85) chain b
residue 324
type
sequence L
description binding site for residue CLA b 609
source : AN9

86) chain b
residue 327
type
sequence T
description binding site for residue CLA b 609
source : AN9

87) chain b
residue 328
type
sequence G
description binding site for residue CLA b 609
source : AN9

88) chain b
residue 329
type
sequence P
description binding site for residue CLA b 609
source : AN9

89) chain b
residue 450
type
sequence W
description binding site for residue CLA b 609
source : AN9

90) chain b
residue 451
type
sequence F
description binding site for residue CLA b 609
source : AN9

91) chain b
residue 455
type
sequence H
description binding site for residue CLA b 609
source : AN9

92) chain b
residue 236
type
sequence T
description binding site for residue CLA b 610
source : AO1

93) chain b
residue 239
type
sequence S
description binding site for residue CLA b 610
source : AO1

94) chain b
residue 240
type
sequence S
description binding site for residue CLA b 610
source : AO1

95) chain b
residue 243
type
sequence A
description binding site for residue CLA b 610
source : AO1

96) chain b
residue 246
type
sequence F
description binding site for residue CLA b 610
source : AO1

97) chain b
residue 463
type
sequence F
description binding site for residue CLA b 610
source : AO1

98) chain b
residue 466
type
sequence H
description binding site for residue CLA b 610
source : AO1

99) chain b
residue 470
type
sequence G
description binding site for residue CLA b 610
source : AO1

100) chain b
residue 139
type
sequence F
description binding site for residue CLA b 611
source : AO2

101) chain b
residue 143
type
sequence L
description binding site for residue CLA b 611
source : AO2

102) chain b
residue 208
type
sequence V
description binding site for residue CLA b 611
source : AO2

103) chain b
residue 212
type
sequence A
description binding site for residue CLA b 611
source : AO2

104) chain b
residue 215
type
sequence F
description binding site for residue CLA b 611
source : AO2

105) chain b
residue 216
type
sequence H
description binding site for residue CLA b 611
source : AO2

106) chain b
residue 219
type
sequence V
description binding site for residue CLA b 611
source : AO2

107) chain b
residue 220
type
sequence R
description binding site for residue CLA b 611
source : AO2

108) chain b
residue 221
type
sequence P
description binding site for residue CLA b 611
source : AO2

109) chain b
residue 222
type
sequence P
description binding site for residue CLA b 611
source : AO2

110) chain b
residue 229
type
sequence L
description binding site for residue CLA b 611
source : AO2

111) chain b
residue 135
type
sequence L
description binding site for residue CLA b 612
source : AO3

112) chain b
residue 138
type
sequence M
description binding site for residue CLA b 612
source : AO3

113) chain b
residue 139
type
sequence F
description binding site for residue CLA b 612
source : AO3

114) chain b
residue 142
type
sequence H
description binding site for residue CLA b 612
source : AO3

115) chain b
residue 143
type
sequence L
description binding site for residue CLA b 612
source : AO3

116) chain b
residue 146
type
sequence A
description binding site for residue CLA b 612
source : AO3

117) chain b
residue 231
type
sequence M
description binding site for residue CLA b 612
source : AO3

118) chain b
residue 237
type
sequence V
description binding site for residue CLA b 612
source : AO3

119) chain b
residue 240
type
sequence S
description binding site for residue CLA b 612
source : AO3

120) chain b
residue 5
type
sequence W
description binding site for residue CLA b 613
source : AO4

121) chain b
residue 6
type
sequence Y
description binding site for residue CLA b 613
source : AO4

122) chain b
residue 7
type
sequence R
description binding site for residue CLA b 613
source : AO4

123) chain b
residue 8
type
sequence V
description binding site for residue CLA b 613
source : AO4

124) chain b
residue 9
type
sequence H
description binding site for residue CLA b 613
source : AO4

125) chain b
residue 10
type
sequence T
description binding site for residue CLA b 613
source : AO4

126) chain b
residue 238
type
sequence L
description binding site for residue CLA b 613
source : AO4

127) chain b
residue 242
type
sequence I
description binding site for residue CLA b 613
source : AO4

128) chain b
residue 461
type
sequence L
description binding site for residue CLA b 613
source : AO4

129) chain b
residue 462
type
sequence F
description binding site for residue CLA b 613
source : AO4

130) chain b
residue 464
type
sequence F
description binding site for residue CLA b 613
source : AO4

131) chain b
residue 465
type
sequence G
description binding site for residue CLA b 613
source : AO4

132) chain b
residue 468
type
sequence W
description binding site for residue CLA b 613
source : AO4

133) chain b
residue 469
type
sequence H
description binding site for residue CLA b 613
source : AO4

134) chain b
residue 9
type
sequence H
description binding site for residue CLA b 614
source : AO5

135) chain b
residue 19
type
sequence L
description binding site for residue CLA b 614
source : AO5

136) chain b
residue 23
type
sequence H
description binding site for residue CLA b 614
source : AO5

137) chain b
residue 26
type
sequence H
description binding site for residue CLA b 614
source : AO5

138) chain b
residue 27
type
sequence T
description binding site for residue CLA b 614
source : AO5

139) chain b
residue 238
type
sequence L
description binding site for residue CLA b 614
source : AO5

140) chain b
residue 241
type
sequence S
description binding site for residue CLA b 614
source : AO5

141) chain b
residue 245
type
sequence V
description binding site for residue CLA b 614
source : AO5

142) chain b
residue 9
type
sequence H
description binding site for residue CLA b 615
source : AO6

143) chain b
residue 26
type
sequence H
description binding site for residue CLA b 615
source : AO6

144) chain b
residue 30
type
sequence V
description binding site for residue CLA b 615
source : AO6

145) chain b
residue 33
type
sequence W
description binding site for residue CLA b 615
source : AO6

146) chain b
residue 462
type
sequence F
description binding site for residue CLA b 615
source : AO6

147) chain b
residue 8
type
sequence V
description binding site for residue CLA b 616
source : AO7

148) chain b
residue 9
type
sequence H
description binding site for residue CLA b 616
source : AO7

149) chain b
residue 29
type
sequence L
description binding site for residue CLA b 616
source : AO7

150) chain b
residue 115
type
sequence W
description binding site for residue CLA b 616
source : AO7

151) chain b
residue 23
type
sequence H
description binding site for residue CLA b 617
source : AO8

152) chain b
residue 24
type
sequence L
description binding site for residue CLA b 617
source : AO8

153) chain b
residue 138
type
sequence M
description binding site for residue CLA b 617
source : AO8

154) chain b
residue 141
type
sequence I
description binding site for residue CLA b 617
source : AO8

155) chain b
residue 142
type
sequence H
description binding site for residue CLA b 617
source : AO8

156) chain b
residue 145
type
sequence L
description binding site for residue CLA b 617
source : AO8

157) chain b
residue 24
type
sequence L
description binding site for residue CLA b 618
source : AO9

158) chain b
residue 110
type
sequence A
description binding site for residue CLA b 618
source : AO9

159) chain b
residue 113
type
sequence W
description binding site for residue CLA b 618
source : AO9

160) chain b
residue 114
type
sequence H
description binding site for residue CLA b 618
source : AO9

161) chain b
residue 120
type
sequence L
description binding site for residue CLA b 618
source : AO9

162) chain b
residue 122
type
sequence L
description binding site for residue CLA b 618
source : AO9

163) chain b
residue 25
type
sequence M
description binding site for residue BCR b 619
source : AP1

164) chain b
residue 29
type
sequence L
description binding site for residue BCR b 619
source : AP1

165) chain b
residue 108
type
sequence F
description binding site for residue BCR b 619
source : AP1

166) chain b
residue 115
type
sequence W
description binding site for residue BCR b 619
source : AP1

167) chain b
residue 29
type
sequence L
description binding site for residue BCR b 620
source : AP2

168) chain b
residue 32
type
sequence G
description binding site for residue BCR b 620
source : AP2

169) chain b
residue 33
type
sequence W
description binding site for residue BCR b 620
source : AP2

170) chain b
residue 36
type
sequence S
description binding site for residue BCR b 620
source : AP2

171) chain b
residue 101
type
sequence I
description binding site for residue BCR b 620
source : AP2

172) chain b
residue 102
type
sequence V
description binding site for residue BCR b 620
source : AP2

173) chain b
residue 106
type
sequence L
description binding site for residue BCR b 621
source : AP3

174) chain b
residue 113
type
sequence W
description binding site for residue BCR b 621
source : AP3

175) chain b
residue 40
type
sequence Y
description binding site for residue LMG b 622
source : AP4

176) chain b
residue 327
type
sequence T
description binding site for residue LMG b 622
source : AP4

177) chain b
residue 329
type
sequence P
description binding site for residue LMG b 622
source : AP4

178) chain b
residue 332
type
sequence K
description binding site for residue LMG b 622
source : AP4

179) chain b
residue 5
type
sequence W
description binding site for residue LHG d 406
source : AS4

180) chain b
residue 6
type
sequence Y
description binding site for residue LHG d 406
source : AS4

181) chain b
residue 7
type
sequence R
description binding site for residue LHG d 406
source : AS4

182) chain b
residue 461
type
sequence L
description binding site for residue LHG d 406
source : AS4

183) chain b
residue 464
type
sequence F
description binding site for residue LHG d 406
source : AS4

184) chain b
residue 468
type
sequence W
description binding site for residue LHG d 406
source : AS4

185) chain b
residue 193
type
sequence Y
description binding site for residue DGD h 102
source : AT2

186) chain b
residue 258
type
sequence Y
description binding site for residue DGD h 102
source : AT2

187) chain b
residue 274
type
sequence Q
description binding site for residue DGD h 102
source : AT2

188) chain b
residue 463
type
sequence F
description binding site for residue DGD h 102
source : AT2

189) chain b
residue 5
type
sequence W
description binding site for residue LHG l 102
source : AT7

190) chain b
residue 6
type
sequence Y
description binding site for residue LHG l 102
source : AT7

191) chain b
residue 197-218
type TRANSMEM
sequence GVVAHHIAAGIVGIIAGLFHIL
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

192) chain b
residue 234-254
type TRANSMEM
sequence IETVLSSSIAAVFFAAFVVAG
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

193) chain b
residue 451-473
type TRANSMEM
sequence FTFAHAVFALLFFFGHIWHGART
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

194) chain b
residue 17-37
type TRANSMEM
sequence GRLIAAHLMHTALVAGWAGSM
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

195) chain b
residue 95-116
type TRANSMEM
sequence GVALAHIVLSGLLFLAACWHWV
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

196) chain b
residue 135-157
type TRANSMEM
sequence LPKMFGIHLFLAGLLCFGFGAFH
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2


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