eF-site ID 5e79-D PDB Code 5e79 Chain D click to enlarge Title Macromolecular diffractive imaging using imperfect crystals Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLT GTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLL LLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQF EIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA PSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALL CAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTAN RFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLA LNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMA PQDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 602 source : AC2 2) chain D residue 268 type sequence H description binding site for residue FE2 A 602 source : AC2 3) chain D residue 214 type sequence H description binding site for residue BCT A 605 source : AC5 4) chain D residue 244 type sequence Y description binding site for residue BCT A 605 source : AC5 5) chain D residue 268 type sequence H description binding site for residue BCT A 605 source : AC5 6) chain D residue 205 type sequence L description binding site for residue CLA A 606 source : AC6 7) chain D residue 157 type sequence F description binding site for residue CLA A 607 source : AC7 8) chain D residue 175 type sequence V description binding site for residue CLA A 607 source : AC7 9) chain D residue 178 type sequence I description binding site for residue CLA A 607 source : AC7 10) chain D residue 179 type sequence F description binding site for residue CLA A 607 source : AC7 11) chain D residue 182 type sequence L description binding site for residue CLA A 607 source : AC7 12) chain D residue 205 type sequence L description binding site for residue PHO A 608 source : AC8 13) chain D residue 209 type sequence L description binding site for residue PHO A 608 source : AC8 14) chain D residue 213 type sequence I description binding site for residue PHO A 608 source : AC8 15) chain D residue 253 type sequence W description binding site for residue PHO A 608 source : AC8 16) chain D residue 257 type sequence F description binding site for residue PHO A 608 source : AC8 17) chain D residue 30 type sequence V description binding site for residue PL9 A 611 source : AD2 18) chain D residue 39 type sequence P description binding site for residue PL9 A 611 source : AD2 19) chain D residue 41 type sequence A description binding site for residue PL9 A 611 source : AD2 20) chain D residue 42 type sequence Y description binding site for residue PL9 A 611 source : AD2 21) chain D residue 45 type sequence L description binding site for residue PL9 A 611 source : AD2 22) chain D residue 232 type sequence F description binding site for residue SQD A 612 source : AD3 23) chain D residue 233 type sequence R description binding site for residue SQD A 612 source : AD3 24) chain D residue 219 type sequence E description binding site for residue LHG A 615 source : AD6 25) chain D residue 220 type sequence N description binding site for residue LHG A 615 source : AD6 26) chain D residue 229 type sequence A description binding site for residue LHG A 615 source : AD6 27) chain D residue 230 type sequence S description binding site for residue LHG A 615 source : AD6 28) chain D residue 231 type sequence T description binding site for residue LHG A 615 source : AD6 29) chain D residue 232 type sequence F description binding site for residue LHG A 615 source : AD6 30) chain D residue 123 type sequence I description binding site for residue CLA B 609 source : AE6 31) chain D residue 41 type sequence A description binding site for residue PHO D 401 source : AI3 32) chain D residue 45 type sequence L description binding site for residue PHO D 401 source : AI3 33) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AI3 34) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AI3 35) chain D residue 118 type sequence G description binding site for residue PHO D 401 source : AI3 36) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI3 37) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AI3 38) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI3 39) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI3 40) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI3 41) chain D residue 146 type sequence F description binding site for residue PHO D 401 source : AI3 42) chain D residue 148 type sequence A description binding site for residue PHO D 401 source : AI3 43) chain D residue 149 type sequence P description binding site for residue PHO D 401 source : AI3 44) chain D residue 153 type sequence F description binding site for residue PHO D 401 source : AI3 45) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AI3 46) chain D residue 279 type sequence L description binding site for residue PHO D 401 source : AI3 47) chain D residue 198 type sequence M description binding site for residue CLA D 402 source : AI4 48) chain D residue 201 type sequence V description binding site for residue CLA D 402 source : AI4 49) chain D residue 202 type sequence A description binding site for residue CLA D 402 source : AI4 50) chain D residue 205 type sequence L description binding site for residue CLA D 402 source : AI4 51) chain D residue 206 type sequence G description binding site for residue CLA D 402 source : AI4 52) chain D residue 45 type sequence L description binding site for residue CLA D 403 source : AI5 53) chain D residue 122 type sequence L description binding site for residue CLA D 403 source : AI5 54) chain D residue 149 type sequence P description binding site for residue CLA D 403 source : AI5 55) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AI5 56) chain D residue 153 type sequence F description binding site for residue CLA D 403 source : AI5 57) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AI5 58) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AI5 59) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AI5 60) chain D residue 186 type sequence Q description binding site for residue CLA D 403 source : AI5 61) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AI5 62) chain D residue 192 type sequence T description binding site for residue CLA D 403 source : AI5 63) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AI5 64) chain D residue 200 type sequence G description binding site for residue CLA D 403 source : AI5 65) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AI5 66) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AI5 67) chain D residue 286 type sequence V description binding site for residue CLA D 403 source : AI5 68) chain D residue 35 type sequence I description binding site for residue CLA D 404 source : AI6 69) chain D residue 39 type sequence P description binding site for residue CLA D 404 source : AI6 70) chain D residue 40 type sequence C description binding site for residue CLA D 404 source : AI6 71) chain D residue 43 type sequence L description binding site for residue CLA D 404 source : AI6 72) chain D residue 89 type sequence L description binding site for residue CLA D 404 source : AI6 73) chain D residue 90 type sequence L description binding site for residue CLA D 404 source : AI6 74) chain D residue 91 type sequence L description binding site for residue CLA D 404 source : AI6 75) chain D residue 92 type sequence L description binding site for residue CLA D 404 source : AI6 76) chain D residue 93 type sequence W description binding site for residue CLA D 404 source : AI6 77) chain D residue 104 type sequence W description binding site for residue CLA D 404 source : AI6 78) chain D residue 112 type sequence T description binding site for residue CLA D 404 source : AI6 79) chain D residue 113 type sequence F description binding site for residue CLA D 404 source : AI6 80) chain D residue 117 type sequence H description binding site for residue CLA D 404 source : AI6 81) chain D residue 199 type sequence M description binding site for residue PL9 D 405 source : AI7 82) chain D residue 214 type sequence H description binding site for residue PL9 D 405 source : AI7 83) chain D residue 217 type sequence T description binding site for residue PL9 D 405 source : AI7 84) chain D residue 253 type sequence W description binding site for residue PL9 D 405 source : AI7 85) chain D residue 260 type sequence A description binding site for residue PL9 D 405 source : AI7 86) chain D residue 261 type sequence F description binding site for residue PL9 D 405 source : AI7 87) chain D residue 267 type sequence L description binding site for residue PL9 D 405 source : AI7 88) chain D residue 270 type sequence F description binding site for residue PL9 D 405 source : AI7 89) chain D residue 278 type sequence G description binding site for residue PL9 D 405 source : AI7 90) chain D residue 141 type sequence Y description binding site for residue LHG D 406 source : AI8 91) chain D residue 269 type sequence F description binding site for residue LHG D 406 source : AI8 92) chain D residue 272 type sequence L description binding site for residue LHG D 406 source : AI8 93) chain D residue 277 type sequence T description binding site for residue LHG D 406 source : AI8 94) chain D residue 256 type sequence I description binding site for residue LHG D 407 source : AI9 95) chain D residue 257 type sequence F description binding site for residue LHG D 407 source : AI9 96) chain D residue 259 type sequence I description binding site for residue LHG D 407 source : AI9 97) chain D residue 260 type sequence A description binding site for residue LHG D 407 source : AI9 98) chain D residue 261 type sequence F description binding site for residue LHG D 407 source : AI9 99) chain D residue 262 type sequence S description binding site for residue LHG D 407 source : AI9 100) chain D residue 263 type sequence N description binding site for residue LHG D 407 source : AI9 101) chain D residue 266 type sequence W description binding site for residue LHG D 407 source : AI9 102) chain D residue 270 type sequence F description binding site for residue LHG D 407 source : AI9 103) chain D residue 67 type sequence Y description binding site for residue LMG D 408 source : AJ1 104) chain D residue 70 type sequence G description binding site for residue LMG D 408 source : AJ1 105) chain D residue 71 type sequence C description binding site for residue LMG D 408 source : AJ1 106) chain D residue 72 type sequence N description binding site for residue LMG D 408 source : AJ1 107) chain D residue 73 type sequence F description binding site for residue LMG D 408 source : AJ1 108) chain D residue 99 type sequence G description binding site for residue DGD E 101 source : AJ2 109) chain D residue 100 type sequence D description binding site for residue DGD E 101 source : AJ2 110) chain D residue 102 type sequence T description binding site for residue DGD E 101 source : AJ2 111) chain D residue 27 type sequence F description binding site for residue LHG E 102 source : AJ3 112) chain D residue 37 type sequence L description binding site for residue LHG E 102 source : AJ3 113) chain D residue 43 type sequence L description binding site for residue BCR F 101 source : AJ5 114) chain D residue 49 type sequence L description binding site for residue BCR F 101 source : AJ5 115) chain D residue 101 type sequence F description binding site for residue BCR F 101 source : AJ5 116) chain D residue 113 type sequence F description binding site for residue BCR F 101 source : AJ5 117) chain D residue 87 type sequence H description binding site for residue DGD H 102 source : AJ8 118) chain D residue 120 type sequence F description binding site for residue DGD H 102 source : AJ8 119) chain D residue 159 type sequence I description binding site for residue DGD H 102 source : AJ8 120) chain D residue 266 type sequence W description binding site for residue LHG L 101 source : AK4 121) chain D residue 273 type sequence F description binding site for residue LHG L 101 source : AK4 122) chain D residue 21 type sequence W description binding site for residue SQD X 101 source : AL1 123) chain D residue 24 type sequence R description binding site for residue SQD X 101 source : AL1 124) chain D residue 26 type sequence R description binding site for residue SQD X 101 source : AL1 125) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244 126) chain D residue 266-288 type TOPO_DOM sequence WLHFFMLFVPVTGLWMSAIGVVG description Lumenal source Swiss-Prot : SWS_FT_FI1 127) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 128) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 129) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 130) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 131) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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