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|
eF-site ID
|
5e5a-D |
|
PDB Code
|
5e5a |
|
Chain
|
D |
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click to enlarge
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Title
|
Crystal structure of the chromatin-tethering domain of Human cytomegalovirus IE1 protein bound to the nucleosome core particle |
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Classification
|
PROTEIN BINDING/VIRAL PROTEIN/DNA |
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Compound
|
DNA (146-MER) |
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Source
|
Xenopus laevis (African clawed frog) (Q6SWP6_HCMVT) |
|
|
Sequence
|
D: |
KKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFV
NDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGEL
AKHAVSEGTKAVTKYTSA
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Description
|
|
Functional site
|
|
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1)
|
chain |
D |
| residue |
102 |
| type |
|
| sequence |
E
|
| description |
binding site for residue MG D 201
|
| source |
: AC3
|
|
|
2)
|
chain |
D |
| residue |
105 |
| type |
|
| sequence |
K
|
| description |
binding site for residue MG D 201
|
| source |
: AC3
|
|
|
3)
|
chain |
D |
| residue |
106 |
| type |
|
| sequence |
H
|
| description |
binding site for residue MG D 201
|
| source |
: AC3
|
|
|
4)
|
chain |
D |
| residue |
45 |
| type |
|
| sequence |
V
|
| description |
binding site for residue MG E 201
|
| source |
: AC4
|
|
|
5)
|
chain |
D |
| residue |
89-111 |
| type |
prosite |
| sequence |
REIQTAVRLLLPGELAKHAVSEG
|
| description |
HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
|
| source |
prosite : PS00357
|
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