eF-site ID 5dyl-A
PDB Code 5dyl
Chain A

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Title Crystal structure of the cGMP-dependent protein kinase PKG from Plasmodium Vivax - Apo form
Classification TRANSFERASE
Compound cGMP-dependent protein kinase, putative
Source (A5K0N4_PLAVS)
Sequence A:  GMRCNEKKKAIFGEDTLMEDHLQLREKLSEDIEMIKASLK
NNLVCSTLNDNEILTLSNYMQFFVFKGGDLVIKQGEKGSY
FFIINSGKFDVYVNDKKVKSMGKGSSFGEAALIHNTQRSA
TIMAETDGTLWGVQRSTFRATLKQLSNRNFNENRSFIDSV
SVFDMLTEAQKNMITNACVIQMFKPGETIVKQGDYGDVLF
ILKEGKATVFINDKEIRVLNKGSYFGERALLYDEPRSATI
IAKEPTACASICRKLLNIVLGNLQVVLFRNIMTEALQQSE
IFRQFSAEQLNDLADTAIVRDYPANYHILHKKSVKYLIVL
EGKVELFLDDESIGILTRGKSFGDQYVLNQKQKFRHTVKS
LDVCKIALITESCLADCLGDNNIDASIDHNNKKSIIKKMY
IFRYLSEQQCNLLIEAFRTTRYEEGDYIIQEGEVGSRFYI
IKNGEVEVTKNKRLRTLGKNDYFGERALLYDEPRTASIIS
KATSVECWFVDKSVFLQIIQGPMLTHLEERIKMQDTKVEM
HELETERIIGRGFGTVKLVHHKPTQIRYALKCVSKRSIIS
LNQQNNIKLEREITAENDHPFIIRLVRTFKDCFYFLTELV
TGGELYDAIRKLGLLSKPQAQFYLGSIILAIEYLHERNIV
YRDLKPENILLDKQGYVKLIDFGCAKKIQGRAYTLVGTPH
YMAPEVILGKGYGCTVDIWALGVCLYEFICGPLPFGNDQE
DQLEIFRDILTGQLTFPDYVSDQDSINLMKRLLCRLPQGR
IGCSINGFKDIKEHAFFGNFNWDKLAGRLLEPPLVSKGET
YA
Description


Functional site

1) chain A
residue 540-563
type prosite
sequence IGRGFGTVKLVHHKPTQIRYALK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGRGTFGTVKlVhhkptqir..........YALK
source prosite : PS00107

2) chain A
residue 653-665
type prosite
sequence IVYRDLKPENILL
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvYrDLKpeNILL
source prosite : PS00108

3) chain A
residue 78-94
type prosite
sequence VIKQGEKGSYFFIINSG
description CNMP_BINDING_1 Cyclic nucleotide-binding domain signature 1. VIkQGEkGSyFFIInsG
source prosite : PS00888

4) chain A
residue 196-212
type prosite
sequence IVKQGDYGDVLFILKEG
description CNMP_BINDING_1 Cyclic nucleotide-binding domain signature 1. VIkQGEkGSyFFIInsG
source prosite : PS00888

5) chain A
residue 438-454
type prosite
sequence IIQEGEVGSRFYIIKNG
description CNMP_BINDING_1 Cyclic nucleotide-binding domain signature 1. VIkQGEkGSyFFIInsG
source prosite : PS00888

6) chain A
residue 114-131
type prosite
sequence FGEAALIHNTQRSATIMA
description CNMP_BINDING_2 Cyclic nucleotide-binding domain signature 2. FGEaALihntq......RSAtImA
source prosite : PS00889

7) chain A
residue 232-249
type prosite
sequence FGERALLYDEPRSATIIA
description CNMP_BINDING_2 Cyclic nucleotide-binding domain signature 2. FGEaALihntq......RSAtImA
source prosite : PS00889

8) chain A
residue 474-491
type prosite
sequence FGERALLYDEPRTASIIS
description CNMP_BINDING_2 Cyclic nucleotide-binding domain signature 2. FGEaALihntq......RSAtImA
source prosite : PS00889

9) chain A
residue 657
type ACT_SITE
sequence D
description Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159
source Swiss-Prot : SWS_FT_FI1

10) chain A
residue 106
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

11) chain A
residue 478
type BINDING
sequence A
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

12) chain A
residue 485
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

13) chain A
residue 486
type BINDING
sequence T
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

14) chain A
residue 115
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

15) chain A
residue 116
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 118
type BINDING
sequence A
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 125
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

18) chain A
residue 126
type BINDING
sequence S
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 466
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

20) chain A
residue 475
type BINDING
sequence G
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

21) chain A
residue 476
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI2

22) chain A
residue 540
type BINDING
sequence I
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159
source Swiss-Prot : SWS_FT_FI3

23) chain A
residue 563
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:31239348, ECO:0007744|PDB:5DZC
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 477
type SITE
sequence R
description Part of a catalytic triad required for cGMP binding and cGMP-dependent kinase activity => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI5

25) chain A
residue 525
type SITE
sequence Q
description Part of a catalytic triad required for cGMP binding and cGMP-dependent kinase activity => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI5

26) chain A
residue 526
type SITE
sequence D
description Part of a catalytic triad required for cGMP binding and cGMP-dependent kinase activity => ECO:0000250|UniProtKB:Q8I719
source Swiss-Prot : SWS_FT_FI5


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