eF-site ID 5dna-ABCD
PDB Code 5dna
Chain A, B, C, D

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Title Crystal structure of Candida boidinii formate dehydrogenase
Classification OXIDOREDUCTASE
Compound FORMATE DEHYDROGENASE
Source Candida boidinii (Yeast) (A0A0A1EQY0_CANBO)
Sequence A:  MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHE
LITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERID
KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNV
VSVAEHVLMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAY
DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALP
KDAEEKVGARRVENIEELVAQADIVTINAPLHAGTKGLIN
KELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG
GDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ
TRYAEGTKNILESFFTGKFDYRPQDIILLNGEYITK
B:  MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHE
LITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERID
KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNV
VSVAEHVLMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAY
DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALP
KDAEEKVGARRVENIEELVAQADIVTINAPLHAGTKGLIN
KELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG
GDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ
TRYAEGTKNILESFFTGKFDYRPQDIILLNGEY
C:  MKIVLVLYDAGKHAKLYGCTENKLGIANWLKDQGHELITT
SDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKK
LKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVA
EHVLMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEG
KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE
EKVGARRVENIEELVAQADIVTINAPLHAGTKGLINKELL
SKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW
FPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYA
EGTKNILESFFTGKFDYRPQDIILLNGEYI
D:  MKIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHE
LITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERID
KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNV
VSVAEHVLMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAY
DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALP
KDAEEKVGARRVENIEELVAQADIVTINAPLHAGTKGLIN
KELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYG
GDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ
TRYAEGTKNILESFFTGKFDYRPQDIILLNGEYITK
Description


Functional site

1) chain A
residue 197
type
sequence Q
description binding site for residue SO4 A 401
source : AC1

2) chain A
residue 198
type
sequence A
description binding site for residue SO4 A 401
source : AC1

3) chain A
residue 211
type
sequence R
description binding site for residue SO4 A 401
source : AC1

4) chain A
residue 173
type
sequence G
description binding site for residue SO4 A 402
source : AC2

5) chain A
residue 174
type
sequence R
description binding site for residue SO4 A 402
source : AC2

6) chain B
residue 173
type
sequence G
description binding site for residue SO4 B 401
source : AC3

7) chain B
residue 174
type
sequence R
description binding site for residue SO4 B 401
source : AC3

8) chain D
residue 173
type
sequence G
description binding site for residue SO4 D 401
source : AC4

9) chain D
residue 174
type
sequence R
description binding site for residue SO4 D 401
source : AC4

10) chain D
residue 197
type
sequence Q
description binding site for residue SO4 D 402
source : AC5

11) chain D
residue 198
type
sequence A
description binding site for residue SO4 D 402
source : AC5

12) chain D
residue 211
type
sequence R
description binding site for residue SO4 D 402
source : AC5

13) chain A
residue 167-195
type prosite
sequence IATIGAGRIGYRVLERLVPFNPKELLYYD
description D_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. IATIGaGRIGyrvlerlvpfnpkeLLyYD
source prosite : PS00065

14) chain A
residue 218-240
type prosite
sequence LVAQADIVTINAPLHAGTKGLIN
description D_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. LVaqADIVtINaPlhagTkgLiN
source prosite : PS00670

15) chain A
residue 247-263
type prosite
sequence FKKGAWLVNTARGAICV
description D_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. FKkGaWLVNtARGaICV
source prosite : PS00671


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