eF-site ID 5dir-B
PDB Code 5dir
Chain B

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Title membrane protein at 2.8 Angstroms
Classification HYDROLASE
Compound Lipoprotein signal peptidase
Source (5DIR)
Sequence B:  PDVDRFGRLPWLWITVLVFVLDQVSKAFFQAELSMYQQIV
VIPDLFSWTLAYNTGAAFSGWQRWLFALIAIVVSASLVVW
LKRLKKGETWLAIALALVLGGALGNLYDRMVLGHVVDFIL
VHWQNRWYFPAFNLADSAITVGAVMLALD
Description


Functional site

1) chain B
residue 42
type
sequence V
description binding site for residue OLC A 206
source : AC6

2) chain B
residue 55
type
sequence T
description binding site for residue OLC B 201
source : AC7

3) chain B
residue 136
type
sequence F
description binding site for residue OLC B 201
source : AC7

4) chain B
residue 137
type
sequence P
description binding site for residue OLC B 201
source : AC7

5) chain B
residue 138
type
sequence A
description binding site for residue OLC B 201
source : AC7

6) chain B
residue 139
type
sequence F
description binding site for residue OLC B 201
source : AC7

7) chain B
residue 148
type
sequence V
description binding site for residue OLC B 201
source : AC7

8) chain B
residue 136
type
sequence F
description binding site for residue OLC B 202
source : AC8

9) chain B
residue 147
type
sequence T
description binding site for residue OLC B 202
source : AC8

10) chain B
residue 151
type
sequence V
description binding site for residue OLC B 202
source : AC8

11) chain B
residue 154
type
sequence A
description binding site for residue OLC B 202
source : AC8

12) chain B
residue 40
type
sequence I
description binding site for residue OLC B 203
source : AC9

13) chain B
residue 42
type
sequence V
description binding site for residue OLC B 203
source : AC9

14) chain B
residue 49
type
sequence W
description binding site for residue OLC B 203
source : AC9

15) chain B
residue 8
type
sequence G
description binding site for residue OLC B 204
source : AD1

16) chain B
residue 9
type
sequence R
description binding site for residue OLC B 204
source : AD1

17) chain B
residue 11
type
sequence P
description binding site for residue OLC B 204
source : AD1

18) chain B
residue 12
type
sequence W
description binding site for residue OLC B 204
source : AD1

19) chain B
residue 93
type
sequence K
description binding site for residue OLC B 204
source : AD1

20) chain B
residue 104
type
sequence L
description binding site for residue OLC B 204
source : AD1

21) chain B
residue 7
type
sequence F
description binding site for residue OLC B 205
source : AD2

22) chain B
residue 14
type
sequence W
description binding site for residue OLC B 205
source : AD2

23) chain B
residue 17
type
sequence V
description binding site for residue OLC B 205
source : AD2

24) chain B
residue 130
type
sequence W
description binding site for residue OLC B 206
source : AD3

25) chain B
residue 134
type
sequence W
description binding site for residue OLC B 206
source : AD3

26) chain B
residue 22
type
sequence L
description binding site for residue OLC B 207
source : AD4

27) chain B
residue 26
type
sequence S
description binding site for residue OLC B 207
source : AD4

28) chain B
residue 33
type
sequence E
description binding site for residue OLC B 207
source : AD4

29) chain B
residue 40
type
sequence I
description binding site for residue OLC B 207
source : AD4

30) chain B
residue 49
type
sequence W
description binding site for residue OLC B 207
source : AD4

31) chain B
residue 55
type
sequence T
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

32) chain B
residue 73
type
sequence F
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

33) chain B
residue 76
type
sequence I
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

34) chain B
residue 77
type
sequence A
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

35) chain B
residue 112
type
sequence N
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

36) chain B
residue 116
type
sequence R
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

37) chain B
residue 122
type
sequence V
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

38) chain B
residue 124
type
sequence D
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

39) chain B
residue 143
type
sequence D
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

40) chain B
residue 146
type
sequence I
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

41) chain B
residue 147
type
sequence T
description binding site for Ligand residues ALO H 204 through SER H 203 bound to SER H 203
source : AF1

42) chain B
residue 90-96
type TOPO_DOM
sequence RLKKGET
description Cytoplasmic => ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI1

43) chain B
residue 10-30
type TRANSMEM
sequence LPWLWITVLVFVLDQVSKAFF
description Helical => ECO:0000255|HAMAP-Rule:MF_00161, ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI2

44) chain B
residue 31-67
type TOPO_DOM
sequence QAELSMYQQIVVIPDLFSWTLAYNTGAAFSG
description Periplasmic => ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI3

45) chain B
residue 119-140
type TOPO_DOM
sequence LGHVVDFILVHWQNRWYFPAFN
description Periplasmic => ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI3

46) chain B
residue 68-89
type TRANSMEM
sequence WQRWLFALIAIVVSASLVVWLK
description Helical => ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI4

47) chain B
residue 97-118
type TRANSMEM
sequence WLAIALALVLGGALGNLYDRMV
description Helical => ECO:0000269|PubMed:26912896, ECO:0000269|PubMed:30272004, ECO:0007744|PDB:5DIR, ECO:0007744|PDB:6FMS
source Swiss-Prot : SWS_FT_FI4

48) chain B
residue 141-154
type TRANSMEM
sequence LADSAITVGAVMLA
description Helical => ECO:0000269|PubMed:26912896, ECO:0007744|PDB:5DIR
source Swiss-Prot : SWS_FT_FI5

49) chain B
residue 124
type ACT_SITE
sequence D
description ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00161, ECO:0000305|PubMed:26912896
source Swiss-Prot : SWS_FT_FI7

50) chain B
residue 143
type ACT_SITE
sequence D
description ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00161, ECO:0000305|PubMed:26912896
source Swiss-Prot : SWS_FT_FI7


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