eF-site ID 5dib-ABCD
PDB Code 5dib
Chain A, B, C, D

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Title 2.25 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) Y450L point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289
Classification OXIDOREDUCTASE
Compound Betaine aldehyde dehydrogenase
Source Staphylococcus aureus (Q9L4P8_STAAU)
Sequence A:  MGMELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIF
TVSEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRA
IADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMY
FAGLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNY
PLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEE
VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETG
KHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQAL
NGGYFHAGQVXSAGSRILVQNSIKDKFEQALIDRVKKIKL
GNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGG
KRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTV
EGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLK
LGTVWINDFHPLFAQAPWGGYKQSGIGRELGKEGLEEYLV
SKHILTNTNPQLVNWFSK
B:  MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTV
SEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIA
DKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPL
LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVG
FPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNG
GYFHAGQVXSAGSRILVQNSIKDKFEQALIDRVKKIKLGN
GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEG
FETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLG
TVWINDFHPLFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
HILTNTNPQLVNWFSK
C:  MGMELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIF
TVSEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRA
IADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMY
FAGLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNY
PLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEE
VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETG
KHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQAL
NGGYFHAGQVXSAGSRILVQNSIKDKFEQALIDRVKKIKL
GNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGG
KRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTV
EGFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLK
LGTVWINDFHPLFAQAPWGGYKQSGIGRELGKEGLEEYLV
SKHILTNTNPQLVNWFSK
D:  MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTV
SEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIA
DKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPL
LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVG
FPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNG
GYFHAGQVXSAGSRILVQNSIKDKFEQALIDRVKKIKLGN
GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEG
FETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLG
TVWINDFHPLFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
HILTNTNPQLVNWFSK
Description


Functional site

1) chain A
residue 153
type
sequence I
description binding site for residue NAD A 501
source : AC1

2) chain A
residue 154
type
sequence T
description binding site for residue NAD A 501
source : AC1

3) chain A
residue 155
type
sequence P
description binding site for residue NAD A 501
source : AC1

4) chain A
residue 156
type
sequence W
description binding site for residue NAD A 501
source : AC1

5) chain A
residue 157
type
sequence N
description binding site for residue NAD A 501
source : AC1

6) chain A
residue 180
type
sequence K
description binding site for residue NAD A 501
source : AC1

7) chain A
residue 182
type
sequence S
description binding site for residue NAD A 501
source : AC1

8) chain A
residue 183
type
sequence E
description binding site for residue NAD A 501
source : AC1

9) chain A
residue 213
type
sequence G
description binding site for residue NAD A 501
source : AC1

10) chain A
residue 217
type
sequence G
description binding site for residue NAD A 501
source : AC1

11) chain A
residue 218
type
sequence D
description binding site for residue NAD A 501
source : AC1

12) chain A
residue 231
type
sequence F
description binding site for residue NAD A 501
source : AC1

13) chain A
residue 233
type
sequence G
description binding site for residue NAD A 501
source : AC1

14) chain A
residue 234
type
sequence G
description binding site for residue NAD A 501
source : AC1

15) chain A
residue 237
type
sequence T
description binding site for residue NAD A 501
source : AC1

16) chain A
residue 240
type
sequence H
description binding site for residue NAD A 501
source : AC1

17) chain A
residue 241
type
sequence I
description binding site for residue NAD A 501
source : AC1

18) chain A
residue 256
type
sequence L
description binding site for residue NAD A 501
source : AC1

19) chain A
residue 257
type
sequence G
description binding site for residue NAD A 501
source : AC1

20) chain A
residue 289
type
sequence X
description binding site for residue NAD A 501
source : AC1

21) chain A
residue 339
type
sequence K
description binding site for residue NAD A 501
source : AC1

22) chain A
residue 390
type
sequence E
description binding site for residue NAD A 501
source : AC1

23) chain A
residue 392
type
sequence F
description binding site for residue NAD A 501
source : AC1

24) chain A
residue 29
type
sequence I
description binding site for residue NA A 502
source : AC2

25) chain A
residue 97
type
sequence D
description binding site for residue NA A 502
source : AC2

26) chain A
residue 184
type
sequence I
description binding site for residue NA A 502
source : AC2

27) chain A
residue 185
type
sequence T
description binding site for residue NA A 502
source : AC2

28) chain A
residue 8
type
sequence S
description binding site for residue EPE A 503
source : AC3

29) chain A
residue 17
type
sequence W
description binding site for residue EPE A 503
source : AC3

30) chain A
residue 191
type
sequence R
description binding site for residue EPE A 503
source : AC3

31) chain A
residue 194
type
sequence E
description binding site for residue EPE A 503
source : AC3

32) chain A
residue 198
type
sequence E
description binding site for residue EPE A 503
source : AC3

33) chain B
residue 266
type
sequence D
description binding site for residue EPE A 503
source : AC3

34) chain B
residue 267
type
sequence D
description binding site for residue EPE A 503
source : AC3

35) chain B
residue 425
type
sequence K
description binding site for residue EPE A 503
source : AC3

36) chain A
residue 266
type
sequence D
description binding site for residue EPE A 504
source : AC4

37) chain A
residue 267
type
sequence D
description binding site for residue EPE A 504
source : AC4

38) chain A
residue 425
type
sequence K
description binding site for residue EPE A 504
source : AC4

39) chain B
residue 8
type
sequence S
description binding site for residue EPE A 504
source : AC4

40) chain B
residue 191
type
sequence R
description binding site for residue EPE A 504
source : AC4

41) chain B
residue 194
type
sequence E
description binding site for residue EPE A 504
source : AC4

42) chain B
residue 198
type
sequence E
description binding site for residue EPE A 504
source : AC4

43) chain A
residue 249
type
sequence V
description binding site for residue NA A 505
source : AC5

44) chain B
residue 460
type
sequence K
description binding site for residue NA A 505
source : AC5

45) chain B
residue 463
type
sequence G
description binding site for residue NA A 505
source : AC5

46) chain B
residue 153
type
sequence I
description binding site for residue NAD B 501
source : AC6

47) chain B
residue 154
type
sequence T
description binding site for residue NAD B 501
source : AC6

48) chain B
residue 155
type
sequence P
description binding site for residue NAD B 501
source : AC6

49) chain B
residue 156
type
sequence W
description binding site for residue NAD B 501
source : AC6

50) chain B
residue 157
type
sequence N
description binding site for residue NAD B 501
source : AC6

51) chain B
residue 180
type
sequence K
description binding site for residue NAD B 501
source : AC6

52) chain B
residue 182
type
sequence S
description binding site for residue NAD B 501
source : AC6

53) chain B
residue 183
type
sequence E
description binding site for residue NAD B 501
source : AC6

54) chain B
residue 213
type
sequence G
description binding site for residue NAD B 501
source : AC6

55) chain B
residue 217
type
sequence G
description binding site for residue NAD B 501
source : AC6

56) chain B
residue 218
type
sequence D
description binding site for residue NAD B 501
source : AC6

57) chain B
residue 231
type
sequence F
description binding site for residue NAD B 501
source : AC6

58) chain B
residue 233
type
sequence G
description binding site for residue NAD B 501
source : AC6

59) chain B
residue 234
type
sequence G
description binding site for residue NAD B 501
source : AC6

60) chain B
residue 237
type
sequence T
description binding site for residue NAD B 501
source : AC6

61) chain B
residue 240
type
sequence H
description binding site for residue NAD B 501
source : AC6

62) chain B
residue 255
type
sequence E
description binding site for residue NAD B 501
source : AC6

63) chain B
residue 256
type
sequence L
description binding site for residue NAD B 501
source : AC6

64) chain B
residue 257
type
sequence G
description binding site for residue NAD B 501
source : AC6

65) chain B
residue 289
type
sequence X
description binding site for residue NAD B 501
source : AC6

66) chain B
residue 339
type
sequence K
description binding site for residue NAD B 501
source : AC6

67) chain B
residue 390
type
sequence E
description binding site for residue NAD B 501
source : AC6

68) chain B
residue 392
type
sequence F
description binding site for residue NAD B 501
source : AC6

69) chain B
residue 29
type
sequence I
description binding site for residue NA B 502
source : AC7

70) chain B
residue 97
type
sequence D
description binding site for residue NA B 502
source : AC7

71) chain B
residue 184
type
sequence I
description binding site for residue NA B 502
source : AC7

72) chain C
residue 153
type
sequence I
description binding site for residue NAD C 501
source : AC8

73) chain C
residue 154
type
sequence T
description binding site for residue NAD C 501
source : AC8

74) chain C
residue 155
type
sequence P
description binding site for residue NAD C 501
source : AC8

75) chain C
residue 156
type
sequence W
description binding site for residue NAD C 501
source : AC8

76) chain C
residue 157
type
sequence N
description binding site for residue NAD C 501
source : AC8

77) chain C
residue 180
type
sequence K
description binding site for residue NAD C 501
source : AC8

78) chain C
residue 182
type
sequence S
description binding site for residue NAD C 501
source : AC8

79) chain C
residue 183
type
sequence E
description binding site for residue NAD C 501
source : AC8

80) chain C
residue 213
type
sequence G
description binding site for residue NAD C 501
source : AC8

81) chain C
residue 217
type
sequence G
description binding site for residue NAD C 501
source : AC8

82) chain C
residue 231
type
sequence F
description binding site for residue NAD C 501
source : AC8

83) chain C
residue 233
type
sequence G
description binding site for residue NAD C 501
source : AC8

84) chain C
residue 234
type
sequence G
description binding site for residue NAD C 501
source : AC8

85) chain C
residue 237
type
sequence T
description binding site for residue NAD C 501
source : AC8

86) chain C
residue 240
type
sequence H
description binding site for residue NAD C 501
source : AC8

87) chain C
residue 255
type
sequence E
description binding site for residue NAD C 501
source : AC8

88) chain C
residue 257
type
sequence G
description binding site for residue NAD C 501
source : AC8

89) chain C
residue 289
type
sequence X
description binding site for residue NAD C 501
source : AC8

90) chain C
residue 339
type
sequence K
description binding site for residue NAD C 501
source : AC8

91) chain C
residue 390
type
sequence E
description binding site for residue NAD C 501
source : AC8

92) chain C
residue 392
type
sequence F
description binding site for residue NAD C 501
source : AC8

93) chain D
residue 153
type
sequence I
description binding site for residue NAD D 501
source : AC9

94) chain D
residue 154
type
sequence T
description binding site for residue NAD D 501
source : AC9

95) chain D
residue 155
type
sequence P
description binding site for residue NAD D 501
source : AC9

96) chain D
residue 156
type
sequence W
description binding site for residue NAD D 501
source : AC9

97) chain D
residue 157
type
sequence N
description binding site for residue NAD D 501
source : AC9

98) chain D
residue 180
type
sequence K
description binding site for residue NAD D 501
source : AC9

99) chain D
residue 182
type
sequence S
description binding site for residue NAD D 501
source : AC9

100) chain D
residue 183
type
sequence E
description binding site for residue NAD D 501
source : AC9

101) chain D
residue 213
type
sequence G
description binding site for residue NAD D 501
source : AC9

102) chain D
residue 217
type
sequence G
description binding site for residue NAD D 501
source : AC9

103) chain D
residue 218
type
sequence D
description binding site for residue NAD D 501
source : AC9

104) chain D
residue 231
type
sequence F
description binding site for residue NAD D 501
source : AC9

105) chain D
residue 233
type
sequence G
description binding site for residue NAD D 501
source : AC9

106) chain D
residue 234
type
sequence G
description binding site for residue NAD D 501
source : AC9

107) chain D
residue 237
type
sequence T
description binding site for residue NAD D 501
source : AC9

108) chain D
residue 240
type
sequence H
description binding site for residue NAD D 501
source : AC9

109) chain D
residue 241
type
sequence I
description binding site for residue NAD D 501
source : AC9

110) chain D
residue 255
type
sequence E
description binding site for residue NAD D 501
source : AC9

111) chain D
residue 256
type
sequence L
description binding site for residue NAD D 501
source : AC9

112) chain D
residue 257
type
sequence G
description binding site for residue NAD D 501
source : AC9

113) chain D
residue 289
type
sequence X
description binding site for residue NAD D 501
source : AC9

114) chain D
residue 339
type
sequence K
description binding site for residue NAD D 501
source : AC9

115) chain D
residue 390
type
sequence E
description binding site for residue NAD D 501
source : AC9

116) chain D
residue 392
type
sequence F
description binding site for residue NAD D 501
source : AC9

117) chain A
residue 282-293
type prosite
sequence YFHAGQVXSAGS
description ALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. YfHAGQVCSAGS
source prosite : PS00070

118) chain A
residue 254-261
type prosite
sequence LELGGKNP
description ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGKNP
source prosite : PS00687


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