eF-site ID 5dg9-A
PDB Code 5dg9
Chain A

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Title CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dGMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION
Classification Transferase/DNA
Compound DNA polymerase eta
Source (5DG9)
Sequence A:  GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVV
QYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLL
AQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEA
YVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTVQ
KEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRA
AIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS
VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFT
ESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCS
KNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV
ATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTV
IKNCNTSGIQTEWSPPLTMLFLCATKFSAS
Description


Functional site

1) chain A
residue 13
type
sequence D
description binding site for residue XG4 A 501
source : AC1

2) chain A
residue 14
type
sequence M
description binding site for residue XG4 A 501
source : AC1

3) chain A
residue 15
type
sequence D
description binding site for residue XG4 A 501
source : AC1

4) chain A
residue 16
type
sequence C
description binding site for residue XG4 A 501
source : AC1

5) chain A
residue 17
type
sequence F
description binding site for residue XG4 A 501
source : AC1

6) chain A
residue 18
type
sequence F
description binding site for residue XG4 A 501
source : AC1

7) chain A
residue 38
type
sequence Q
description binding site for residue XG4 A 501
source : AC1

8) chain A
residue 48
type
sequence I
description binding site for residue XG4 A 501
source : AC1

9) chain A
residue 49
type
sequence A
description binding site for residue XG4 A 501
source : AC1

10) chain A
residue 52
type
sequence Y
description binding site for residue XG4 A 501
source : AC1

11) chain A
residue 55
type
sequence R
description binding site for residue XG4 A 501
source : AC1

12) chain A
residue 61
type
sequence R
description binding site for residue XG4 A 501
source : AC1

13) chain A
residue 114
type
sequence I
description binding site for residue XG4 A 501
source : AC1

14) chain A
residue 115
type
sequence D
description binding site for residue XG4 A 501
source : AC1

15) chain A
residue 13
type
sequence D
description binding site for residue MG A 502
source : AC2

16) chain A
residue 115
type
sequence D
description binding site for residue MG A 502
source : AC2

17) chain A
residue 116
type
sequence E
description binding site for residue MG A 502
source : AC2

18) chain A
residue 13
type
sequence D
description binding site for residue MG A 503
source : AC3

19) chain A
residue 14
type
sequence M
description binding site for residue MG A 503
source : AC3

20) chain A
residue 115
type
sequence D
description binding site for residue MG A 503
source : AC3

21) chain A
residue 24
type
sequence R
description binding site for residue GOL A 504
source : AC4

22) chain A
residue 244
type
sequence P
description binding site for residue GOL A 504
source : AC4

23) chain A
residue 247
type
sequence F
description binding site for residue GOL A 504
source : AC4

24) chain A
residue 248
type
sequence S
description binding site for residue GOL A 504
source : AC4

25) chain A
residue 276
type
sequence G
description binding site for residue GOL A 504
source : AC4

26) chain A
residue 277
type
sequence E
description binding site for residue GOL A 504
source : AC4

27) chain A
residue 13
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:27284197, ECO:0007744|PDB:5KFO
source Swiss-Prot : SWS_FT_FI1

28) chain A
residue 14
type BINDING
sequence M
description BINDING => ECO:0000269|PubMed:27284197, ECO:0007744|PDB:5KFO
source Swiss-Prot : SWS_FT_FI1

29) chain A
residue 115
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:27284197, ECO:0007744|PDB:5KFO
source Swiss-Prot : SWS_FT_FI1

30) chain A
residue 116
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:27284197, ECO:0007744|PDB:5KFO
source Swiss-Prot : SWS_FT_FI1

31) chain A
residue 61
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27284197
source Swiss-Prot : SWS_FT_FI2


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