eF-site ID 5df5-D
PDB Code 5df5
Chain D

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Title The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.
Classification ELECTRON TRANSPORT
Compound Cytochrome c, somatic
Source Rattus norvegicus (Rat) (CYC_RAT)
Sequence D:  GDVEKGKKIFVQKCAQCHTVEKGGKHKEGPNLHGLFGRKT
GQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKM
IFAGIKKKGERADLIAYLKKATNE
Description


Functional site

1) chain D
residue 57
type
sequence I
description binding site for residue FC6 B 203
source : AC3

2) chain D
residue 58
type
sequence T
description binding site for residue FC6 B 203
source : AC3

3) chain D
residue 87
type
sequence K
description binding site for residue FC6 C 202
source : AC4

4) chain D
residue 88
type
sequence K
description binding site for residue FC6 C 202
source : AC4

5) chain D
residue 89
type
sequence G
description binding site for residue FC6 C 202
source : AC4

6) chain D
residue 13
type
sequence K
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

7) chain D
residue 14
type
sequence C
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

8) chain D
residue 15
type
sequence A
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

9) chain D
residue 16
type
sequence Q
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

10) chain D
residue 18
type
sequence H
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

11) chain D
residue 27
type
sequence K
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

12) chain D
residue 28
type
sequence E
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

13) chain D
residue 29
type
sequence G
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

14) chain D
residue 30
type
sequence P
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

15) chain D
residue 40
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

16) chain D
residue 41
type
sequence G
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

17) chain D
residue 48
type
sequence Y
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

18) chain D
residue 49
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

19) chain D
residue 52
type
sequence N
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

20) chain D
residue 59
type
sequence W
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

21) chain D
residue 67
type
sequence Y
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

22) chain D
residue 78
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

23) chain D
residue 79
type
sequence K
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

24) chain D
residue 80
type
sequence M
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

25) chain D
residue 81
type
sequence I
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

26) chain D
residue 82
type
sequence F
description binding site for Di-peptide HEC D 201 and CYS D 17
source : AC9

27) chain D
residue 10
type
sequence F
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

28) chain D
residue 13
type
sequence K
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

29) chain D
residue 15
type
sequence A
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

30) chain D
residue 16
type
sequence Q
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

31) chain D
residue 17
type
sequence C
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

32) chain D
residue 18
type
sequence H
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

33) chain D
residue 28
type
sequence E
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

34) chain D
residue 29
type
sequence G
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

35) chain D
residue 30
type
sequence P
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

36) chain D
residue 40
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

37) chain D
residue 41
type
sequence G
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

38) chain D
residue 48
type
sequence Y
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

39) chain D
residue 49
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

40) chain D
residue 52
type
sequence N
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

41) chain D
residue 59
type
sequence W
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

42) chain D
residue 67
type
sequence Y
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

43) chain D
residue 78
type
sequence T
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

44) chain D
residue 79
type
sequence K
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

45) chain D
residue 80
type
sequence M
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

46) chain D
residue 81
type
sequence I
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

47) chain D
residue 82
type
sequence F
description binding site for Di-peptide HEC D 201 and CYS D 14
source : AD1

48) chain D
residue 1
type MOD_RES
sequence G
description N-acetylglycine => ECO:0000269|PubMed:191069
source Swiss-Prot : SWS_FT_FI3

49) chain D
residue 48
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P62894
source Swiss-Prot : SWS_FT_FI4

50) chain D
residue 97
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P62894
source Swiss-Prot : SWS_FT_FI4

51) chain D
residue 55
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI5

52) chain D
residue 72
type MOD_RES
sequence K
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI6

53) chain D
residue 99
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI7

54) chain D
residue 14
type BINDING
sequence C
description covalent
source Swiss-Prot : SWS_FT_FI1

55) chain D
residue 17
type BINDING
sequence C
description covalent
source Swiss-Prot : SWS_FT_FI1

56) chain D
residue 18
type BINDING
sequence H
description axial binding residue
source Swiss-Prot : SWS_FT_FI2

57) chain D
residue 80
type BINDING
sequence M
description axial binding residue
source Swiss-Prot : SWS_FT_FI2


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