eF-site ID 5da7-D
PDB Code 5da7
Chain D

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Title monomeric PCNA bound to a small protein inhibitor
Classification DNA binding protein/inhibitor
Compound DNA polymerase sliding clamp 1, Proliferating cell nuclear antigen
Source Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (Q5JH72_THEKO)
Sequence D:  PFEVVFDGAKEFADLIATASNLIDEAAFKFTEEGISMRAM
DPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILK
RGKAKDTLILRKGDENFLEITFEGTAKRTFRLPLIDVEEL
ELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKFIAKE
NEFTMKAEGETNEVEIRLTLEDEGLLDLEVEEETKSAYGI
RYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTF
LLAPRVE
Description


Functional site

1) chain D
residue 117
type
sequence D
description binding site for residue SO4 A 305
source : AC5

2) chain D
residue 45
type
sequence R
description binding site for residue SO4 D 301
source : AD2

3) chain D
residue 94
type
sequence G
description binding site for residue SO4 D 302
source : AD3

4) chain D
residue 95
type
sequence D
description binding site for residue SO4 D 302
source : AD3

5) chain D
residue 96
type
sequence E
description binding site for residue SO4 D 302
source : AD3

6) chain D
residue 112
type
sequence R
description binding site for residue SO4 D 302
source : AD3

7) chain D
residue 160
type
sequence K
description binding site for residue SO4 D 303
source : AD4

8) chain D
residue 194
type
sequence E
description binding site for residue SO4 D 303
source : AD4

9) chain D
residue 196
type
sequence K
description binding site for residue SO4 D 303
source : AD4

10) chain D
residue 46
type
sequence V
description binding site for residue SO4 D 304
source : AD5

11) chain D
residue 200
type
sequence G
description binding site for residue SO4 D 304
source : AD5

12) chain D
residue 203
type
sequence Y
description binding site for residue SO4 D 304
source : AD5

13) chain D
residue 244
type
sequence A
description binding site for residue SO4 D 304
source : AD5

14) chain D
residue 245
type
sequence P
description binding site for residue SO4 D 304
source : AD5

15) chain D
residue 246
type
sequence R
description binding site for residue SO4 D 304
source : AD5

16) chain D
residue 43
type
sequence P
description binding site for residue SO4 E 101
source : AD8


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