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eF-site ID
|
5d57-F |
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PDB Code
|
5d57 |
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Chain
|
F |
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click to enlarge
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Title
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In meso X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K |
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Classification
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TRANSFERASE |
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Compound
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Diacylglycerol kinase |
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Source
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Escherichia coli (strain K12) (KDGL_ECOLI) |
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Sequence
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F: |
EGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNS
AIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWA
ILLWSHFG
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Description
|
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Functional site
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|
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1)
|
chain |
F |
| residue |
76 |
| type |
BINDING |
| sequence |
E
|
| description |
BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
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2)
|
chain |
F |
| residue |
85 |
| type |
BINDING |
| sequence |
E
|
| description |
BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
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3)
|
chain |
F |
| residue |
94 |
| type |
BINDING |
| sequence |
K
|
| description |
BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
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4)
|
chain |
F |
| residue |
47 |
| type |
BINDING |
| sequence |
W
|
| description |
BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
|
| source |
Swiss-Prot : SWS_FT_FI13
|
|
|
5)
|
chain |
F |
| residue |
55 |
| type |
BINDING |
| sequence |
R
|
| description |
BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
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6)
|
chain |
F |
| residue |
69 |
| type |
BINDING |
| sequence |
E
|
| description |
BINDING => ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
7)
|
chain |
F |
| residue |
98 |
| type |
BINDING |
| sequence |
S
|
| description |
BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129
|
| source |
Swiss-Prot : SWS_FT_FI16
|
|
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8)
|
chain |
F |
| residue |
112 |
| type |
BINDING |
| sequence |
W
|
| description |
BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
|
| source |
Swiss-Prot : SWS_FT_FI17
|
|
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9)
|
chain |
F |
| residue |
51-68 |
| type |
TRANSMEM |
| sequence |
DAVTRVLLISSVMLVMIV
|
| description |
Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
10)
|
chain |
F |
| residue |
48-50 |
| type |
TOPO_DOM |
| sequence |
LDV
|
| description |
Periplasmic => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
11)
|
chain |
F |
| residue |
69-94 |
| type |
TOPO_DOM |
| sequence |
ELLNSAIEAVVDRIGSEYHELSGRAK
|
| description |
Cytoplasmic => ECO:0000305|PubMed:8071224
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
12)
|
chain |
F |
| residue |
95-118 |
| type |
TRANSMEM |
| sequence |
DLGSAAVLIAIIDAVITWAILLWS
|
| description |
Helical => ECO:0000305|PubMed:8071224
|
| source |
Swiss-Prot : SWS_FT_FI5
|
|
|
13)
|
chain |
F |
| residue |
119-121 |
| type |
TOPO_DOM |
| sequence |
HFG
|
| description |
Periplasmic => ECO:0000269|PubMed:15919996, ECO:0000269|PubMed:8071224
|
| source |
Swiss-Prot : SWS_FT_FI6
|
|
|
14)
|
chain |
F |
| residue |
69 |
| type |
ACT_SITE |
| sequence |
E
|
| description |
Proton acceptor => ECO:0000305|PubMed:26673816
|
| source |
Swiss-Prot : SWS_FT_FI7
|
|
|
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