eF-site ID 5d57-B
PDB Code 5d57
Chain B

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Title In meso X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K
Classification TRANSFERASE
Compound Diacylglycerol kinase
Source Escherichia coli (strain K12) (KDGL_ECOLI)
Sequence B:  AAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSV
MLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVL
IAIIDAVITWAILLWSHFG
Description


Functional site
1) chain B
residue 103
type
sequence I
description binding site for residue 78M A 204
source : AC4
2) chain B
residue 110
type
sequence I
description binding site for residue 78M A 204
source : AC4
3) chain B
residue 106
type
sequence I
description binding site for residue 78M A 205
source : AC5
4) chain B
residue 69
type
sequence E
description binding site for residue 78M A 206
source : AC6
5) chain B
residue 98
type
sequence S
description binding site for residue 78M A 206
source : AC6
6) chain B
residue 101
type
sequence V
description binding site for residue 78M A 206
source : AC6
7) chain B
residue 117
type
sequence W
description binding site for residue 78M B 201
source : AC7
8) chain B
residue 34
type
sequence E
description binding site for residue 78M B 202
source : AC8
9) chain B
residue 62
type
sequence V
description binding site for residue 78M B 202
source : AC8
10) chain B
residue 65
type
sequence V
description binding site for residue 78M B 202
source : AC8
11) chain B
residue 69
type
sequence E
description binding site for residue 78M B 202
source : AC8
12) chain B
residue 105
type
sequence I
description binding site for residue 78M B 202
source : AC8
13) chain B
residue 108
type
sequence A
description binding site for residue 78M B 202
source : AC8
14) chain B
residue 112
type
sequence W
description binding site for residue 78M B 202
source : AC8
15) chain B
residue 113
type
sequence A
description binding site for residue 78M B 202
source : AC8
16) chain B
residue 46
type
sequence A
description binding site for residue 78M B 203
source : AC9
17) chain B
residue 55
type
sequence R
description binding site for residue 78M B 203
source : AC9
18) chain B
residue 47
type
sequence W
description binding site for residue 78M B 204
source : AD1
19) chain B
residue 48
type
sequence L
description binding site for residue 78M B 204
source : AD1
20) chain B
residue 49
type
sequence D
description binding site for residue 78M B 204
source : AD1
21) chain B
residue 26
type
sequence I
description binding site for residue 78M D 203
source : AD6
22) chain B
residue 32
type
sequence R
description binding site for residue 78M D 203
source : AD6
23) chain B
residue 35
type
sequence G
description binding site for residue 78M D 203
source : AD6
24) chain B
residue 36
type
sequence V
description binding site for residue 78M D 203
source : AD6
25) chain B
residue 63
type
sequence M
description binding site for residue 78M D 203
source : AD6
26) chain B
residue 69
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI15
27) chain B
residue 98
type BINDING
sequence S
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129
source Swiss-Prot : SWS_FT_FI16
28) chain B
residue 112
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI17
29) chain B
residue 55
type BINDING
sequence R
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
source Swiss-Prot : SWS_FT_FI14
30) chain B
residue 69
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000305|PubMed:26673816
source Swiss-Prot : SWS_FT_FI7
31) chain B
residue 31-47
type TRANSMEM
sequence FRQEGVAVLLCVVIAAW
description Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI2
32) chain B
residue 51-68
type TRANSMEM
sequence DAVTRVLLISSVMLVMIV
description Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI2
33) chain B
residue 48-50
type TOPO_DOM
sequence LDV
description Periplasmic => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI3
34) chain B
residue 69-94
type TOPO_DOM
sequence ELLNSAIEAVVDRIGSEYHELSGRAK
description Cytoplasmic => ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI4
35) chain B
residue 95-118
type TRANSMEM
sequence DLGSAAVLIAIIDAVITWAILLWS
description Helical => ECO:0000305|PubMed:8071224
source Swiss-Prot : SWS_FT_FI5
36) chain B
residue 119-121
type TOPO_DOM
sequence HFG
description Periplasmic => ECO:0000269|PubMed:15919996, ECO:0000269|PubMed:8071224
source Swiss-Prot : SWS_FT_FI6
37) chain B
residue 94
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10
38) chain B
residue 28
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10
39) chain B
residue 76
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10
40) chain B
residue 85
type BINDING
sequence E
description BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26
source Swiss-Prot : SWS_FT_FI10
41) chain B
residue 30
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129
source Swiss-Prot : SWS_FT_FI12
42) chain B
residue 47
type BINDING
sequence W
description BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25
source Swiss-Prot : SWS_FT_FI13

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