eF-site ID 5d4j-ABC
PDB Code 5d4j
Chain A, B, C

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Title Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
Classification OXIDOREDUCTASE
Compound Copper-containing nitrite reductase
Source (NIR_ALCFA)
Sequence A:  AAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTMVI
EEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTL
INPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILRFK
ATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDG
KGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAYED
TVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLIVH
SQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFIPG
GAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVTGE
WNDDLMTSVLAPSGT
B:  ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTM
VIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL
TLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILR
FKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLH
DGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAY
EDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLI
VHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFI
PGGAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVT
GEWNDDLMTSVLAPSG
C:  ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTM
VIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL
TLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILR
FKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLH
DGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAY
EDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLI
VHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFI
PGGAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVT
GEWNDDLMTSVLAPSG
Description


Functional site

1) chain A
residue 95
type
sequence H
description binding site for residue CU A 501
source : AC1

2) chain A
residue 136
type
sequence C
description binding site for residue CU A 501
source : AC1

3) chain A
residue 145
type
sequence H
description binding site for residue CU A 501
source : AC1

4) chain A
residue 150
type
sequence M
description binding site for residue CU A 501
source : AC1

5) chain A
residue 100
type
sequence H
description binding site for residue CU A 502
source : AC2

6) chain A
residue 135
type
sequence H
description binding site for residue CU A 502
source : AC2

7) chain C
residue 306
type
sequence H
description binding site for residue CU A 502
source : AC2

8) chain A
residue 257
type
sequence I
description binding site for residue CL A 503
source : AC3

9) chain A
residue 306
type
sequence H
description binding site for residue CL A 503
source : AC3

10) chain B
residue 98
type
sequence D
description binding site for residue CL A 503
source : AC3

11) chain B
residue 135
type
sequence H
description binding site for residue CL A 503
source : AC3

12) chain A
residue 24
type
sequence F
description binding site for residue GOL A 504
source : AC4

13) chain A
residue 25
type
sequence V
description binding site for residue GOL A 504
source : AC4

14) chain A
residue 174
type
sequence K
description binding site for residue GOL A 504
source : AC4

15) chain A
residue 175
type
sequence I
description binding site for residue GOL A 504
source : AC4

16) chain A
residue 52
type
sequence I
description binding site for residue GOL A 505
source : AC5

17) chain A
residue 53
type
sequence D
description binding site for residue GOL A 505
source : AC5

18) chain A
residue 54
type
sequence D
description binding site for residue GOL A 505
source : AC5

19) chain A
residue 223
type
sequence A
description binding site for residue GOL A 505
source : AC5

20) chain A
residue 224
type
sequence V
description binding site for residue GOL A 505
source : AC5

21) chain A
residue 193
type
sequence Y
description binding site for residue GOL A 506
source : AC6

22) chain A
residue 216
type
sequence T
description binding site for residue GOL A 506
source : AC6

23) chain A
residue 217
type
sequence H
description binding site for residue GOL A 506
source : AC6

24) chain A
residue 313
type
sequence E
description binding site for residue GOL A 506
source : AC6

25) chain A
residue 314
type
sequence L
description binding site for residue GOL A 506
source : AC6

26) chain B
residue 211
type
sequence R
description binding site for residue GOL A 506
source : AC6

27) chain A
residue 28
type
sequence H
description binding site for residue ACY A 507
source : AC7

28) chain B
residue 95
type
sequence H
description binding site for residue CU B 501
source : AC8

29) chain B
residue 136
type
sequence C
description binding site for residue CU B 501
source : AC8

30) chain B
residue 145
type
sequence H
description binding site for residue CU B 501
source : AC8

31) chain B
residue 150
type
sequence M
description binding site for residue CU B 501
source : AC8

32) chain A
residue 306
type
sequence H
description binding site for residue CU B 502
source : AC9

33) chain B
residue 100
type
sequence H
description binding site for residue CU B 502
source : AC9

34) chain B
residue 135
type
sequence H
description binding site for residue CU B 502
source : AC9

35) chain B
residue 257
type
sequence I
description binding site for residue CL B 503
source : AD1

36) chain B
residue 306
type
sequence H
description binding site for residue CL B 503
source : AD1

37) chain C
residue 98
type
sequence D
description binding site for residue CL B 503
source : AD1

38) chain C
residue 135
type
sequence H
description binding site for residue CL B 503
source : AD1

39) chain B
residue 193
type
sequence Y
description binding site for residue GOL B 504
source : AD2

40) chain B
residue 216
type
sequence T
description binding site for residue GOL B 504
source : AD2

41) chain B
residue 217
type
sequence H
description binding site for residue GOL B 504
source : AD2

42) chain B
residue 224
type
sequence V
description binding site for residue GOL B 504
source : AD2

43) chain B
residue 313
type
sequence E
description binding site for residue GOL B 504
source : AD2

44) chain B
residue 314
type
sequence L
description binding site for residue GOL B 504
source : AD2

45) chain C
residue 211
type
sequence R
description binding site for residue GOL B 504
source : AD2

46) chain B
residue 326
type
sequence W
description binding site for residue GOL B 505
source : AD3

47) chain B
residue 332
type
sequence T
description binding site for residue GOL B 505
source : AD3

48) chain B
residue 333
type
sequence S
description binding site for residue GOL B 505
source : AD3

49) chain A
residue 313
type
sequence E
description binding site for residue ACY B 506
source : AD4

50) chain B
residue 140
type
sequence G
description binding site for residue ACY B 506
source : AD4

51) chain B
residue 141
type
sequence M
description binding site for residue ACY B 506
source : AD4

52) chain B
residue 142
type
sequence V
description binding site for residue ACY B 506
source : AD4

53) chain B
residue 143
type
sequence P
description binding site for residue ACY B 506
source : AD4

54) chain B
residue 144
type
sequence W
description binding site for residue ACY B 506
source : AD4

55) chain B
residue 203
type
sequence Y
description binding site for residue ACY B 506
source : AD4

56) chain A
residue 98
type
sequence D
description binding site for residue CL C 601
source : AD5

57) chain A
residue 100
type
sequence H
description binding site for residue CL C 601
source : AD5

58) chain A
residue 135
type
sequence H
description binding site for residue CL C 601
source : AD5

59) chain C
residue 255
type
sequence H
description binding site for residue CL C 601
source : AD5

60) chain C
residue 257
type
sequence I
description binding site for residue CL C 601
source : AD5

61) chain C
residue 306
type
sequence H
description binding site for residue CL C 601
source : AD5

62) chain C
residue 95
type
sequence H
description binding site for residue CU C 602
source : AD6

63) chain C
residue 136
type
sequence C
description binding site for residue CU C 602
source : AD6

64) chain C
residue 145
type
sequence H
description binding site for residue CU C 602
source : AD6

65) chain C
residue 150
type
sequence M
description binding site for residue CU C 602
source : AD6

66) chain B
residue 306
type
sequence H
description binding site for residue CU C 603
source : AD7

67) chain C
residue 100
type
sequence H
description binding site for residue CU C 603
source : AD7

68) chain C
residue 135
type
sequence H
description binding site for residue CU C 603
source : AD7

69) chain A
residue 106
type
sequence L
description binding site for residue GOL C 604
source : AD8

70) chain A
residue 137
type
sequence A
description binding site for residue GOL C 604
source : AD8

71) chain C
residue 302
type
sequence A
description binding site for residue GOL C 604
source : AD8

72) chain C
residue 326
type
sequence W
description binding site for residue GOL C 605
source : AD9

73) chain C
residue 328
type
sequence D
description binding site for residue GOL C 605
source : AD9

74) chain C
residue 332
type
sequence T
description binding site for residue GOL C 605
source : AD9

75) chain C
residue 333
type
sequence S
description binding site for residue GOL C 605
source : AD9

76) chain A
residue 213
type
sequence L
description binding site for residue GOL C 606
source : AE1

77) chain A
residue 214
type
sequence T
description binding site for residue GOL C 606
source : AE1

78) chain B
residue 213
type
sequence L
description binding site for residue GOL C 606
source : AE1

79) chain B
residue 214
type
sequence T
description binding site for residue GOL C 606
source : AE1

80) chain C
residue 212
type
sequence T
description binding site for residue GOL C 606
source : AE1

81) chain C
residue 213
type
sequence L
description binding site for residue GOL C 606
source : AE1

82) chain C
residue 214
type
sequence T
description binding site for residue GOL C 606
source : AE1

83) chain A
residue 229
type
sequence G
description binding site for residue GOL C 607
source : AE2

84) chain A
residue 230
type
sequence D
description binding site for residue GOL C 607
source : AE2

85) chain A
residue 232
type
sequence A
description binding site for residue GOL C 607
source : AE2

86) chain A
residue 321
type
sequence K
description binding site for residue GOL C 607
source : AE2

87) chain C
residue 51
type
sequence V
description binding site for residue GOL C 607
source : AE2

88) chain C
residue 53
type
sequence D
description binding site for residue GOL C 607
source : AE2

89) chain C
residue 54
type
sequence D
description binding site for residue GOL C 607
source : AE2

90) chain C
residue 59
type
sequence V
description binding site for residue GOL C 608
source : AE3

91) chain C
residue 60
type
sequence H
description binding site for residue GOL C 608
source : AE3

92) chain C
residue 148
type
sequence S
description binding site for residue GOL C 608
source : AE3

93) chain C
residue 206
type
sequence T
description binding site for residue GOL C 608
source : AE3

94) chain C
residue 28
type
sequence H
description binding site for residue ACY C 609
source : AE4

95) chain C
residue 30
type
sequence Q
description binding site for residue ACY C 609
source : AE4

96) chain A
residue 136
type BINDING
sequence C
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

97) chain A
residue 145
type BINDING
sequence H
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

98) chain A
residue 150
type BINDING
sequence M
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

99) chain B
residue 136
type BINDING
sequence C
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

100) chain B
residue 145
type BINDING
sequence H
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

101) chain B
residue 150
type BINDING
sequence M
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

102) chain C
residue 136
type BINDING
sequence C
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

103) chain C
residue 145
type BINDING
sequence H
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

104) chain C
residue 150
type BINDING
sequence M
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

105) chain A
residue 306
type BINDING
sequence H
description type 2 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI4

106) chain B
residue 306
type BINDING
sequence H
description type 2 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI4

107) chain C
residue 306
type BINDING
sequence H
description type 2 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI4

108) chain A
residue 95
type BINDING
sequence H
description type 1 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI1

109) chain B
residue 95
type BINDING
sequence H
description type 1 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI1

110) chain C
residue 95
type BINDING
sequence H
description type 1 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI1

111) chain A
residue 100
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

112) chain A
residue 135
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

113) chain B
residue 100
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

114) chain B
residue 135
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

115) chain C
residue 100
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

116) chain C
residue 135
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2


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