eF-site ID 5d4h-A
PDB Code 5d4h
Chain A

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Title High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Classification OXIDOREDUCTASE
Compound Copper-containing nitrite reductase
Source (NIR_ALCFA)
Sequence A:  ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTM
VIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLEL
TLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILR
FKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLH
DGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAY
EDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLI
VHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFI
PGGAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVT
GEWNDDLMTSVLAPSGT
Description


Functional site

1) chain A
residue 95
type
sequence H
description binding site for residue CU A 501
source : AC1

2) chain A
residue 136
type
sequence C
description binding site for residue CU A 501
source : AC1

3) chain A
residue 145
type
sequence H
description binding site for residue CU A 501
source : AC1

4) chain A
residue 150
type
sequence M
description binding site for residue CU A 501
source : AC1

5) chain A
residue 98
type
sequence D
description binding site for residue CU A 502
source : AC2

6) chain A
residue 100
type
sequence H
description binding site for residue CU A 502
source : AC2

7) chain A
residue 135
type
sequence H
description binding site for residue CU A 502
source : AC2

8) chain A
residue 98
type
sequence D
description binding site for residue NO2 A 503
source : AC3

9) chain A
residue 100
type
sequence H
description binding site for residue NO2 A 503
source : AC3

10) chain A
residue 135
type
sequence H
description binding site for residue NO2 A 503
source : AC3

11) chain A
residue 255
type
sequence H
description binding site for residue NO2 A 504
source : AC4

12) chain A
residue 257
type
sequence I
description binding site for residue NO2 A 504
source : AC4

13) chain A
residue 306
type
sequence H
description binding site for residue NO2 A 504
source : AC4

14) chain A
residue 308
type
sequence L
description binding site for residue NO2 A 504
source : AC4

15) chain A
residue 52
type
sequence I
description binding site for residue GOL A 505
source : AC5

16) chain A
residue 53
type
sequence D
description binding site for residue GOL A 505
source : AC5

17) chain A
residue 54
type
sequence D
description binding site for residue GOL A 505
source : AC5

18) chain A
residue 224
type
sequence V
description binding site for residue GOL A 505
source : AC5

19) chain A
residue 193
type
sequence Y
description binding site for residue GOL A 506
source : AC6

20) chain A
residue 216
type
sequence T
description binding site for residue GOL A 506
source : AC6

21) chain A
residue 217
type
sequence H
description binding site for residue GOL A 506
source : AC6

22) chain A
residue 313
type
sequence E
description binding site for residue GOL A 506
source : AC6

23) chain A
residue 314
type
sequence L
description binding site for residue GOL A 506
source : AC6

24) chain A
residue 142
type
sequence V
description binding site for residue GOL A 507
source : AC7

25) chain A
residue 213
type
sequence L
description binding site for residue GOL A 508
source : AC8

26) chain A
residue 250
type
sequence R
description binding site for residue GOL A 508
source : AC8

27) chain A
residue 230
type
sequence D
description binding site for residue GOL A 509
source : AC9

28) chain A
residue 231
type
sequence K
description binding site for residue GOL A 509
source : AC9

29) chain A
residue 229
type
sequence G
description binding site for residue GOL A 510
source : AD1

30) chain A
residue 230
type
sequence D
description binding site for residue GOL A 510
source : AD1

31) chain A
residue 232
type
sequence A
description binding site for residue GOL A 510
source : AD1

32) chain A
residue 234
type
sequence T
description binding site for residue GOL A 510
source : AD1

33) chain A
residue 321
type
sequence K
description binding site for residue GOL A 510
source : AD1

34) chain A
residue 24
type
sequence F
description binding site for residue GOL A 511
source : AD2

35) chain A
residue 25
type
sequence V
description binding site for residue GOL A 511
source : AD2

36) chain A
residue 174
type
sequence K
description binding site for residue GOL A 511
source : AD2

37) chain A
residue 175
type
sequence I
description binding site for residue GOL A 511
source : AD2

38) chain A
residue 174
type
sequence K
description binding site for residue GOL A 512
source : AD3

39) chain A
residue 234
type
sequence T
description binding site for residue GOL A 512
source : AD3

40) chain A
residue 46
type
sequence E
description binding site for residue GOL A 513
source : AD4

41) chain A
residue 48
type
sequence K
description binding site for residue GOL A 513
source : AD4

42) chain A
residue 326
type
sequence W
description binding site for residue GOL A 514
source : AD5

43) chain A
residue 332
type
sequence T
description binding site for residue GOL A 514
source : AD5

44) chain A
residue 333
type
sequence S
description binding site for residue GOL A 514
source : AD5

45) chain A
residue 140
type
sequence G
description binding site for residue ACY A 516
source : AD7

46) chain A
residue 141
type
sequence M
description binding site for residue ACY A 516
source : AD7

47) chain A
residue 142
type
sequence V
description binding site for residue ACY A 516
source : AD7

48) chain A
residue 143
type
sequence P
description binding site for residue ACY A 516
source : AD7

49) chain A
residue 144
type
sequence W
description binding site for residue ACY A 516
source : AD7

50) chain A
residue 306
type
sequence H
description binding site for residue CU B 502
source : AD9

51) chain A
residue 302
type
sequence A
description binding site for residue GOL B 504
source : AE2

52) chain A
residue 313
type
sequence E
description binding site for residue ACY B 508
source : AE6

53) chain A
residue 212
type
sequence T
description binding site for residue GOL C 503
source : AE9

54) chain A
residue 213
type
sequence L
description binding site for residue GOL C 503
source : AE9

55) chain A
residue 214
type
sequence T
description binding site for residue GOL C 503
source : AE9

56) chain A
residue 211
type
sequence R
description binding site for residue GOL C 508
source : AF5

57) chain A
residue 105
type
sequence A
description binding site for residue GOL C 509
source : AF6

58) chain A
residue 95
type BINDING
sequence H
description type 1 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI1

59) chain A
residue 100
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

60) chain A
residue 135
type BINDING
sequence H
description type 2 copper site
source Swiss-Prot : SWS_FT_FI2

61) chain A
residue 136
type BINDING
sequence C
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

62) chain A
residue 145
type BINDING
sequence H
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

63) chain A
residue 150
type BINDING
sequence M
description type 1 copper site
source Swiss-Prot : SWS_FT_FI3

64) chain A
residue 306
type BINDING
sequence H
description type 2 copper site => ECO:0000269|PubMed:8172899
source Swiss-Prot : SWS_FT_FI4


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