eF-site ID 5d1p-B
PDB Code 5d1p
Chain B

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Title Archaeal ATP-dependent RNA ligase - form 2
Classification LIGASE
Compound ATP-dependent RNA ligase
Source Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum) (O27289_METTH)
Sequence B:  DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLF
KKPLGDLEAGTVIYLGDETEVIRGFPKIRRTLLLSPTIQE
HFRDRVAVEEXMNGYNVRIACLSSGETVALTRGGHVCPFT
TRKAQELLDLSEFFREHPDLVICGEMIGRDNPYVSQDYPE
VGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF
GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLK
YTSSQAHARELAYAFSYPFDFGRPFFFSRVIREGFQAYEL
DESDDETRERARRLGEAIIYPMLERIKSISAGEAAYEDTV
IDVEDREAAEEFIRHLVRLGVSATLADYRDGRATIRRFYQ
STTDRINNYLKGGLY
Description (1)  ATP-dependent RNA ligase


Functional site

1) chain B
residue 76
type
sequence R
description binding site for residue SO4 B 501
source : AC5

2) chain B
residue 97
type
sequence X
description binding site for residue SO4 B 501
source : AC5

3) chain B
residue 246
type
sequence K
description binding site for residue SO4 B 501
source : AC5

4) chain B
residue 278
type
sequence R
description binding site for residue SO4 B 501
source : AC5

5) chain B
residue 73
type
sequence K
description binding site for residue SO4 B 502
source : AC6

6) chain B
residue 74
type
sequence I
description binding site for residue SO4 B 502
source : AC6

7) chain B
residue 97
type
sequence X
description binding site for residue SO4 B 502
source : AC6

8) chain B
residue 118
type
sequence R
description binding site for residue SO4 B 502
source : AC6

9) chain B
residue 246
type
sequence K
description binding site for residue SO4 B 502
source : AC6

10) chain B
residue 163
type
sequence D
description binding site for residue SO4 B 503
source : AC7

11) chain B
residue 255
type
sequence R
description binding site for residue SO4 B 503
source : AC7

12) chain B
residue 97
type
sequence X
description binding site for residue MG B 504
source : AC8


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