eF-site ID 5d1p-AB PDB Code 5d1p Chain A, B click to enlarge Title Archaeal ATP-dependent RNA ligase - form 2 Classification LIGASE Compound ATP-dependent RNA ligase Source Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum) (O27289_METTH) Sequence A:  DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLF KKPLGDLEAGTVIYLGDETEVIRGFPKIRRTLLLSPTIQE HFRDRVAVEEXMNGYNVRIACLSSGETVALTRGGHVCPFT TRKAQELLDLSEFFREHPDLVICGEMIGRDNPYVSQDYPE VGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLK YTSSQAHARELAYAFSYPFDFGRPFFFSRVIREGFQAYEL DESDDETRERARRLGEAIIYPMLERIKSISAGEAAYEDTV IDVEDREAAEEFIRHLVRLGVSATLADYRDGRATIRRFYQ STTDRINNYLKGGLY B:  DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLF KKPLGDLEAGTVIYLGDETEVIRGFPKIRRTLLLSPTIQE HFRDRVAVEEXMNGYNVRIACLSSGETVALTRGGHVCPFT TRKAQELLDLSEFFREHPDLVICGEMIGRDNPYVSQDYPE VGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLK YTSSQAHARELAYAFSYPFDFGRPFFFSRVIREGFQAYEL DESDDETRERARRLGEAIIYPMLERIKSISAGEAAYEDTV IDVEDREAAEEFIRHLVRLGVSATLADYRDGRATIRRFYQ STTDRINNYLKGGLY Description (1)  ATP-dependent RNA ligase Functional site 1) chain A residue 76 type sequence R description binding site for residue SO4 A 501 source : AC1 2) chain A residue 97 type sequence X description binding site for residue SO4 A 501 source : AC1 3) chain A residue 246 type sequence K description binding site for residue SO4 A 501 source : AC1 4) chain A residue 278 type sequence R description binding site for residue SO4 A 501 source : AC1 5) chain A residue 73 type sequence K description binding site for residue SO4 A 502 source : AC2 6) chain A residue 74 type sequence I description binding site for residue SO4 A 502 source : AC2 7) chain A residue 97 type sequence X description binding site for residue SO4 A 502 source : AC2 8) chain A residue 118 type sequence R description binding site for residue SO4 A 502 source : AC2 9) chain A residue 246 type sequence K description binding site for residue SO4 A 502 source : AC2 10) chain A residue 20 type sequence P description binding site for residue SO4 A 503 source : AC3 11) chain A residue 23 type sequence R description binding site for residue SO4 A 503 source : AC3 12) chain A residue 251 type sequence Q description binding site for residue SO4 A 503 source : AC3 13) chain A residue 298 type sequence R description binding site for residue SO4 A 503 source : AC3 14) chain A residue 299 type sequence R description binding site for residue SO4 A 503 source : AC3 15) chain A residue 97 type sequence X description binding site for residue MG A 504 source : AC4 16) chain B residue 76 type sequence R description binding site for residue SO4 B 501 source : AC5 17) chain B residue 97 type sequence X description binding site for residue SO4 B 501 source : AC5 18) chain B residue 246 type sequence K description binding site for residue SO4 B 501 source : AC5 19) chain B residue 278 type sequence R description binding site for residue SO4 B 501 source : AC5 20) chain B residue 73 type sequence K description binding site for residue SO4 B 502 source : AC6 21) chain B residue 74 type sequence I description binding site for residue SO4 B 502 source : AC6 22) chain B residue 97 type sequence X description binding site for residue SO4 B 502 source : AC6 23) chain B residue 118 type sequence R description binding site for residue SO4 B 502 source : AC6 24) chain B residue 246 type sequence K description binding site for residue SO4 B 502 source : AC6 25) chain B residue 163 type sequence D description binding site for residue SO4 B 503 source : AC7 26) chain B residue 255 type sequence R description binding site for residue SO4 B 503 source : AC7 27) chain B residue 97 type sequence X description binding site for residue MG B 504 source : AC8

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