eF-site ID 5d0a-C
PDB Code 5d0a
Chain C

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Title Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop
Classification oxidoreductase/RNA
Compound Epoxyqueuosine reductase
Source (5D0A)
Sequence C:  NVYQLKEELIEYAKSIGVDKIGFTTADTFDSLKDRLILQE
SLGYLSGFEEPDIEKRVTPKLLLPKAKSIVAIALAYPSRM
KDAPRSTRTERRGIFCRASWGKDYHDVLREKLDLLEDFLK
SKHDIRTKSMVDTGELSDRAVAERAGIGFSAKNCMITTPE
YGSYVYLAEMITNIPFEPDVPIEDMCGSCTKCLDACPTGA
LVNPGQLNAQRCISFLTQTKGFLPDEFRTKIGNRLYGCDT
CQTVCPLNKGKDFHLHPEMEPDPEIAKPLLKPLLAISNRE
FKEKFGHVSGSWRGKKPIQRNAILALAHFKDASALPELTE
LMHKDPRPVIRGTAAWAIGKIGDPAYAEELEKALEKEKDE
EAKLEIEKGIELLKAS
Description


Functional site

1) chain C
residue 153
type
sequence A
description binding site for residue SF4 C 501
source : AD2

2) chain C
residue 154
type
sequence K
description binding site for residue SF4 C 501
source : AD2

3) chain C
residue 155
type
sequence N
description binding site for residue SF4 C 501
source : AD2

4) chain C
residue 188
type
sequence C
description binding site for residue SF4 C 501
source : AD2

5) chain C
residue 191
type
sequence C
description binding site for residue SF4 C 501
source : AD2

6) chain C
residue 194
type
sequence C
description binding site for residue SF4 C 501
source : AD2

7) chain C
residue 247
type
sequence C
description binding site for residue SF4 C 501
source : AD2

8) chain C
residue 198
type
sequence C
description binding site for residue SF4 C 502
source : AD3

9) chain C
residue 209
type
sequence L
description binding site for residue SF4 C 502
source : AD3

10) chain C
residue 214
type
sequence C
description binding site for residue SF4 C 502
source : AD3

11) chain C
residue 215
type
sequence I
description binding site for residue SF4 C 502
source : AD3

12) chain C
residue 240
type
sequence C
description binding site for residue SF4 C 502
source : AD3

13) chain C
residue 242
type
sequence T
description binding site for residue SF4 C 502
source : AD3

14) chain C
residue 243
type
sequence C
description binding site for residue SF4 C 502
source : AD3

15) chain C
residue 32
type
sequence S
description binding site for residue B12 C 503
source : AD4

16) chain C
residue 33
type
sequence L
description binding site for residue B12 C 503
source : AD4

17) chain C
residue 36
type
sequence R
description binding site for residue B12 C 503
source : AD4

18) chain C
residue 47
type
sequence S
description binding site for residue B12 C 503
source : AD4

19) chain C
residue 49
type
sequence F
description binding site for residue B12 C 503
source : AD4

20) chain C
residue 50
type
sequence E
description binding site for residue B12 C 503
source : AD4

21) chain C
residue 57
type
sequence R
description binding site for residue B12 C 503
source : AD4

22) chain C
residue 97
type
sequence C
description binding site for residue B12 C 503
source : AD4

23) chain C
residue 134
type
sequence D
description binding site for residue B12 C 503
source : AD4

24) chain C
residue 138
type
sequence L
description binding site for residue B12 C 503
source : AD4

25) chain C
residue 139
type
sequence S
description binding site for residue B12 C 503
source : AD4

26) chain C
residue 140
type
sequence D
description binding site for residue B12 C 503
source : AD4

27) chain C
residue 141
type
sequence R
description binding site for residue B12 C 503
source : AD4

28) chain C
residue 145
type
sequence E
description binding site for residue B12 C 503
source : AD4

29) chain C
residue 152
type
sequence S
description binding site for residue B12 C 503
source : AD4

30) chain C
residue 155
type
sequence N
description binding site for residue B12 C 503
source : AD4

31) chain C
residue 156
type
sequence C
description binding site for residue B12 C 503
source : AD4

32) chain C
residue 157
type
sequence M
description binding site for residue B12 C 503
source : AD4

33) chain C
residue 158
type
sequence I
description binding site for residue B12 C 503
source : AD4

34) chain C
residue 165
type
sequence S
description binding site for residue B12 C 503
source : AD4

35) chain C
residue 167
type
sequence V
description binding site for residue B12 C 503
source : AD4

36) chain C
residue 169
type
sequence L
description binding site for residue B12 C 503
source : AD4

37) chain C
residue 206
type
sequence P
description binding site for residue B12 C 503
source : AD4

38) chain C
residue 207
type
sequence G
description binding site for residue B12 C 503
source : AD4

39) chain C
residue 209
type
sequence L
description binding site for residue B12 C 503
source : AD4

40) chain C
residue 216
type
sequence S
description binding site for residue B12 C 503
source : AD4

41) chain C
residue 217
type
sequence F
description binding site for residue B12 C 503
source : AD4

42) chain C
residue 239
type
sequence G
description binding site for residue B12 C 503
source : AD4

43) chain C
residue 240
type
sequence C
description binding site for residue B12 C 503
source : AD4

44) chain C
residue 241
type
sequence D
description binding site for residue B12 C 503
source : AD4

45) chain C
residue 243
type
sequence C
description binding site for residue B12 C 503
source : AD4

46) chain C
residue 244
type
sequence Q
description binding site for residue B12 C 503
source : AD4

47) chain C
residue 49
type
sequence F
description binding site for residue GOL C 504
source : AD5

48) chain C
residue 134
type
sequence D
description binding site for residue GOL C 504
source : AD5

49) chain C
residue 220
type
sequence Q
description binding site for residue GOL C 504
source : AD5

50) chain C
residue 238
type
sequence Y
description binding site for residue GOL C 504
source : AD5

51) chain C
residue 294
type
sequence W
description binding site for residue GOL C 504
source : AD5

52) chain C
residue 112
type
sequence K
description binding site for residue PO4 C 505
source : AD6

53) chain C
residue 258
type
sequence H
description binding site for residue PO4 C 505
source : AD6

54) chain C
residue 259
type
sequence P
description binding site for residue PO4 C 505
source : AD6

55) chain C
residue 260
type
sequence E
description binding site for residue PO4 C 505
source : AD6

56) chain C
residue 134
type ACT_SITE
sequence D
description Proton donor => ECO:0000305|PubMed:27638883
source Swiss-Prot : SWS_FT_FI1

57) chain C
residue 57
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

58) chain C
residue 97
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

59) chain C
residue 134
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

60) chain C
residue 139
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

61) chain C
residue 152
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

62) chain C
residue 155
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

63) chain C
residue 158
type BINDING
sequence I
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

64) chain C
residue 169
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

65) chain C
residue 188
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

66) chain C
residue 191
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

67) chain C
residue 194
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

68) chain C
residue 198
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

69) chain C
residue 214
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

70) chain C
residue 216
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

71) chain C
residue 240
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

72) chain C
residue 243
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

73) chain C
residue 247
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
source Swiss-Prot : SWS_FT_FI2

74) chain C
residue 220
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

75) chain C
residue 222
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

76) chain C
residue 280
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

77) chain C
residue 281
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

78) chain C
residue 295
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

79) chain C
residue 297
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3

80) chain C
residue 298
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:27638883
source Swiss-Prot : SWS_FT_FI3


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