eF-site ID 5d0a-D PDB Code 5d0a Chain D click to enlarge Title Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop Classification oxidoreductase/RNA Compound Epoxyqueuosine reductase Source (5D0A) Sequence D:  NVYQLKEELIEYAKSIGVDKIGFTTADTFDSLKDRLILQE SLGYLSGFEEPDIEKRVTPKLLLPKAKSIVAIALAYPSRM KDAPRSTRTERRGIFCRASWGKDYHDVLREKLDLLEDFLK SKHDIRTKSMVDTGELSDRAVAERAGIGFSAKNCMITTPE YGSYVYLAEMITNIPFEPDVPIEDMCGSCTKCLDACPTGA LVNPGQLNAQRCISFLTQTKGFLPDEFRTKIGNRLYGCDT CQTVCPLNKGKDFHLHPEMEPDPEIAKPLLKPLLAISNRE FKEKFGHVSGSWRGKKPIQRNAILALAHFKDASALPELTE LMHKDPRPVIRGTAAWAIGKIGDPAYAEELEKALEKEKDE EAKLEIEKGIELLKA Description Functional site 1) chain D residue 153 type sequence A description binding site for residue SF4 D 501 source : AD7 2) chain D residue 154 type sequence K description binding site for residue SF4 D 501 source : AD7 3) chain D residue 155 type sequence N description binding site for residue SF4 D 501 source : AD7 4) chain D residue 188 type sequence C description binding site for residue SF4 D 501 source : AD7 5) chain D residue 191 type sequence C description binding site for residue SF4 D 501 source : AD7 6) chain D residue 194 type sequence C description binding site for residue SF4 D 501 source : AD7 7) chain D residue 247 type sequence C description binding site for residue SF4 D 501 source : AD7 8) chain D residue 249 type sequence L description binding site for residue SF4 D 501 source : AD7 9) chain D residue 198 type sequence C description binding site for residue SF4 D 502 source : AD8 10) chain D residue 209 type sequence L description binding site for residue SF4 D 502 source : AD8 11) chain D residue 214 type sequence C description binding site for residue SF4 D 502 source : AD8 12) chain D residue 215 type sequence I description binding site for residue SF4 D 502 source : AD8 13) chain D residue 240 type sequence C description binding site for residue SF4 D 502 source : AD8 14) chain D residue 243 type sequence C description binding site for residue SF4 D 502 source : AD8 15) chain D residue 32 type sequence S description binding site for residue B12 D 503 source : AD9 16) chain D residue 33 type sequence L description binding site for residue B12 D 503 source : AD9 17) chain D residue 36 type sequence R description binding site for residue B12 D 503 source : AD9 18) chain D residue 47 type sequence S description binding site for residue B12 D 503 source : AD9 19) chain D residue 50 type sequence E description binding site for residue B12 D 503 source : AD9 20) chain D residue 57 type sequence R description binding site for residue B12 D 503 source : AD9 21) chain D residue 97 type sequence C description binding site for residue B12 D 503 source : AD9 22) chain D residue 134 type sequence D description binding site for residue B12 D 503 source : AD9 23) chain D residue 138 type sequence L description binding site for residue B12 D 503 source : AD9 24) chain D residue 139 type sequence S description binding site for residue B12 D 503 source : AD9 25) chain D residue 140 type sequence D description binding site for residue B12 D 503 source : AD9 26) chain D residue 141 type sequence R description binding site for residue B12 D 503 source : AD9 27) chain D residue 142 type sequence A description binding site for residue B12 D 503 source : AD9 28) chain D residue 152 type sequence S description binding site for residue B12 D 503 source : AD9 29) chain D residue 155 type sequence N description binding site for residue B12 D 503 source : AD9 30) chain D residue 156 type sequence C description binding site for residue B12 D 503 source : AD9 31) chain D residue 158 type sequence I description binding site for residue B12 D 503 source : AD9 32) chain D residue 165 type sequence S description binding site for residue B12 D 503 source : AD9 33) chain D residue 167 type sequence V description binding site for residue B12 D 503 source : AD9 34) chain D residue 169 type sequence L description binding site for residue B12 D 503 source : AD9 35) chain D residue 206 type sequence P description binding site for residue B12 D 503 source : AD9 36) chain D residue 207 type sequence G description binding site for residue B12 D 503 source : AD9 37) chain D residue 209 type sequence L description binding site for residue B12 D 503 source : AD9 38) chain D residue 216 type sequence S description binding site for residue B12 D 503 source : AD9 39) chain D residue 239 type sequence G description binding site for residue B12 D 503 source : AD9 40) chain D residue 240 type sequence C description binding site for residue B12 D 503 source : AD9 41) chain D residue 241 type sequence D description binding site for residue B12 D 503 source : AD9 42) chain D residue 243 type sequence C description binding site for residue B12 D 503 source : AD9 43) chain D residue 244 type sequence Q description binding site for residue B12 D 503 source : AD9 44) chain D residue 49 type sequence F description binding site for residue GOL D 504 source : AE1 45) chain D residue 134 type sequence D description binding site for residue GOL D 504 source : AE1 46) chain D residue 220 type sequence Q description binding site for residue GOL D 504 source : AE1 47) chain D residue 238 type sequence Y description binding site for residue GOL D 504 source : AE1 48) chain D residue 294 type sequence W description binding site for residue GOL D 504 source : AE1 49) chain D residue 112 type sequence K description binding site for residue PO4 D 505 source : AE2 50) chain D residue 258 type sequence H description binding site for residue PO4 D 505 source : AE2 51) chain D residue 259 type sequence P description binding site for residue PO4 D 505 source : AE2 52) chain D residue 260 type sequence E description binding site for residue PO4 D 505 source : AE2 53) chain D residue 220 type BINDING sequence Q description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 54) chain D residue 222 type BINDING sequence K description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 55) chain D residue 280 type BINDING sequence N description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 56) chain D residue 281 type BINDING sequence R description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 57) chain D residue 295 type BINDING sequence R description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 58) chain D residue 297 type BINDING sequence K description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 59) chain D residue 298 type BINDING sequence K description BINDING => ECO:0000269|PubMed:27638883 source Swiss-Prot : SWS_FT_FI3 60) chain D residue 134 type ACT_SITE sequence D description Proton donor => ECO:0000305|PubMed:27638883 source Swiss-Prot : SWS_FT_FI1 61) chain D residue 57 type BINDING sequence R description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 62) chain D residue 97 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 63) chain D residue 134 type BINDING sequence D description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 64) chain D residue 139 type BINDING sequence S description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 65) chain D residue 152 type BINDING sequence S description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 66) chain D residue 155 type BINDING sequence N description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 67) chain D residue 158 type BINDING sequence I description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 68) chain D residue 169 type BINDING sequence L description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 69) chain D residue 188 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 70) chain D residue 191 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 71) chain D residue 194 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 72) chain D residue 198 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 73) chain D residue 214 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 74) chain D residue 216 type BINDING sequence S description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 75) chain D residue 240 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 76) chain D residue 243 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2 77) chain D residue 247 type BINDING sequence C description BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B source Swiss-Prot : SWS_FT_FI2

Display surface Download Links