eF-site ID 5cwr-B
PDB Code 5cwr
Chain B

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Title Crystal Structure of human DNA polymerase lambda L431A mutant in complex with a one nucleotide DNA gap and dCTP
Classification TRANSFERASE/DNA
Compound DNA polymerase lambda
Source Homo sapiens (Human) (5CWR)
Sequence B:  TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSF
HKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHIS
ESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL
TTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSG
LLCVACGSYRRGKATCGDVDVAITHPDGRSHRGIFSRLLD
SLRQEGFLTDDLVSQGQQQKYLGVCRLPGPGRRHRRLDII
VVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHAL
STAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAE
RDW
Description


Functional site

1) chain B
residue 386
type
sequence R
description binding site for residue DCP B 601
source : AC4

2) chain B
residue 416
type
sequence G
description binding site for residue DCP B 601
source : AC4

3) chain B
residue 417
type
sequence S
description binding site for residue DCP B 601
source : AC4

4) chain B
residue 420
type
sequence R
description binding site for residue DCP B 601
source : AC4

5) chain B
residue 426
type
sequence G
description binding site for residue DCP B 601
source : AC4

6) chain B
residue 427
type
sequence D
description binding site for residue DCP B 601
source : AC4

7) chain B
residue 429
type
sequence D
description binding site for residue DCP B 601
source : AC4

8) chain B
residue 505
type
sequence Y
description binding site for residue DCP B 601
source : AC4

9) chain B
residue 506
type
sequence F
description binding site for residue DCP B 601
source : AC4

10) chain B
residue 507
type
sequence T
description binding site for residue DCP B 601
source : AC4

11) chain B
residue 508
type
sequence G
description binding site for residue DCP B 601
source : AC4

12) chain B
residue 510
type
sequence A
description binding site for residue DCP B 601
source : AC4

13) chain B
residue 513
type
sequence N
description binding site for residue DCP B 601
source : AC4

14) chain B
residue 427
type
sequence D
description binding site for residue CA B 602
source : AC5

15) chain B
residue 429
type
sequence D
description binding site for residue CA B 602
source : AC5

16) chain B
residue 490
type
sequence D
description binding site for residue CA B 602
source : AC5

17) chain B
residue 427
type
sequence D
description binding site for residue CA B 603
source : AC6

18) chain B
residue 429
type
sequence D
description binding site for residue CA B 603
source : AC6

19) chain B
residue 312
type ACT_SITE
sequence K
description Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865
source Swiss-Prot : SWS_FT_FI1

20) chain B
residue 386
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI2

21) chain B
residue 417
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI2

22) chain B
residue 426
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI2

23) chain B
residue 513
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI2

24) chain B
residue 427
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI3

25) chain B
residue 429
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI3

26) chain B
residue 490
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
source Swiss-Prot : SWS_FT_FI3


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