eF-site ID 5cci-F
PDB Code 5cci
Chain F

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Title Structure of the Mg2+-bound synaptotagmin-1 SNARE complex (short unit cell form)
Classification ENDOCYTOSIS,EXOCYTOSIS
Compound Vesicle-associated membrane protein 2
Source Rattus norvegicus (Rat) (SYT1_RAT)
Sequence F:  KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPY
VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG
GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR
DLQSAEKGDICFSLRYVPTAGKLTVVILEAKNLKKMSDPY
VKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ
IQKVQVVVTVLDYDKGKNDAIGKVFVGYNSTGAELRHWSD
MLANPRRPIAQWHTLQVEEEVDAMLAVK
Description


Functional site

1) chain F
residue 172
type
sequence D
description binding site for residue MG F 501
source : AC3

2) chain F
residue 178
type
sequence D
description binding site for residue MG F 501
source : AC3

3) chain F
residue 231
type
sequence F
description binding site for residue MG F 501
source : AC3

4) chain F
residue 346
type
sequence E
description binding site for residue MG F 501
source : AC3

5) chain F
residue 302
type
sequence M
description binding site for residue MG F 502
source : AC4

6) chain F
residue 363
type
sequence D
description binding site for residue MG F 502
source : AC4

7) chain F
residue 365
type
sequence D
description binding site for residue MG F 502
source : AC4

8) chain F
residue 185
type
sequence L
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

9) chain F
residue 186
type
sequence L
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

10) chain F
residue 187
type
sequence P
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

11) chain F
residue 189
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

12) chain F
residue 191
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

13) chain F
residue 192
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

14) chain F
residue 214
type
sequence V
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC5

15) chain F
residue 185
type
sequence L
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

16) chain F
residue 186
type
sequence L
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

17) chain F
residue 187
type
sequence P
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

18) chain F
residue 189
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

19) chain F
residue 191
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

20) chain F
residue 192
type
sequence K
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

21) chain F
residue 214
type
sequence V
description binding site for Di-peptide ASP F 188 and LYS F 190
source : AC6

22) chain F
residue 264
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P46096
source Swiss-Prot : SWS_FT_FI3

23) chain F
residue 342
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:22673903
source Swiss-Prot : SWS_FT_FI4

24) chain F
residue 344
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:22673903
source Swiss-Prot : SWS_FT_FI4

25) chain F
residue 171
type BINDING
sequence L
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

26) chain F
residue 172
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

27) chain F
residue 178
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

28) chain F
residue 230
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

29) chain F
residue 231
type BINDING
sequence F
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

30) chain F
residue 232
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

31) chain F
residue 235
type BINDING
sequence S
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

32) chain F
residue 236
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

33) chain F
residue 238
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

34) chain F
residue 309
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

35) chain F
residue 363
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

36) chain F
residue 365
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

37) chain F
residue 371
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00041
source Swiss-Prot : SWS_FT_FI1

38) chain F
residue 229
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P46096
source Swiss-Prot : SWS_FT_FI2


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